This paper is a review of the biology of Sacramento perch (Archoplites interruptus) based mainly on recent studies of their distribution, ecology, physiology, and genetics. The Sacramento perch is the only member of the family Centrarchidae that is endemic to California. It is most closely related to the rock basses (Ambloplites spp.) and is thought to have split from its eastern cousins during the Middle Miocene Period (15.5 to 5.2 million years ago, MYA). Their native range includes the Central Valley, Pajaro and Salinas rivers, tributaries to the San Francisco Estuary (e.g., Alameda Creek), and Clear Lake (Lake County). Today, they are most likely extirpated from all of their native range. They are known to persist in 28 waters outside their native range: 17 in California, nine in Nevada, and one each in Utah and Colorado. Disappearance from their native range coincided with massive changes to aquatic habitats in the Central Valley and with the introduction of alien species, including other centrarchids. Unfortunately, many populations established outside their native range have also disappeared and are continuing to do so.

Fishes were sampled on the restored floodplain of the Cosumnes River in Central California in order to determine patterns of floodplain use. The floodplain was sampled for seven years (1998-2002, 2004-2005) during the winter-spring flooding season. The fishes fell into five groups: (1) floodplain spawners, (2) river spawners, (3) floodplain foragers, (4) floodplain pond fishes, and (5) inadvertent users. Eight of the 18 abundant species were natives, while the rest were aliens. There was a consistent pattern of floodplain use, modified by timing and extent of flooding. The first fishes to appear were floodplain foragers, inadvertent users, and juvenile Chinook salmon (river spawners). Next were floodplain spawners, principally Sacramento splittail and common carp. At the end of the season, in ponds of residual water, non-native annual fishes, mainly inland silverside and western mosquitofish, became abundant. Adult spawners left when inflow decreased; their juveniles persisted as long as flood pulses kept water levels up and temperatures low. Juvenile splittail and carp quickly grew large enough to dominate floodplain fish samples, along with smaller numbers of juvenile Sacramento sucker and pikeminnow (river spawners). Such juveniles left the Relatively few fishes that used the floodplain for spawning or rearing became stranded, except late season alien fishes. Most alien fishes had resident populations in adjacent river, sloughs, and ditches and were not dependent on the floodplain for persistence. This indicates that Central Valley floodplains managed to favor native fishes should have the following char- acteristics: (1) extensive early season flooding, (2) complete drainage by the end of the flooding season, (3) few areas with permanent water, (4) a mosaic of physical habitats, (5) regular annual flooding but with high variability in flood regime.