Fumigation with either gas cartridges or aluminum phosphide is often considered to be an effective method for controlling California ground squirrel populations, although few studies have corroborated their effectiveness. Additionally, utilizing aluminum phosphide in combination with gas cartridges could increase effectiveness of both fumigants by indicating additional burrow openings through escaping smoke from gas cartridges and allowing for treatment of these additional openings with aluminum phosphide, which is a cheaper and potentially more effective material. Therefore, we compared the efficacy of gas cartridges, aluminum phosphide, and a combined treatment on ground squirrel populations from mid-April through early May 2009 to determine which was most effective. We established 4 plots (3 treatments plus control) at each of 2 treatment sites in Madera County, California. All plots were between 1 and 2 ha in size with survey areas of 0.3 - 0.5 ha centrally located within the plot. Ground squirrels were visually counted within survey areas for 3 consecutive days prior to treatment. Following counting, treatments were applied. Forty-eight hours post-treatment, squirrels were again counted within survey areas to determine percent control. These counts were repeated the following 2 days. All treatments were then reapplied for the same plots, with similar surveys again following 48 hours post-treatment. We found that all fumigation methods resulted in marginal to exceptional control of ground squirrels (percent control: gas cartridges = 62 - 86%, aluminum phosphide = 97 - 100%, gas cartridges + aluminum phosphide = 59 - 71%). We suggest aluminum phosphide use could be expanded to increase ground squirrel control in California, given its high efficacy combined with its relatively cheap material cost.

There is an urgent need to develop climate smart agroecosystems capable of mitigating climate change and adapting to its effects. In California, high commodity prices and increased frequency of drought have encouraged orchard turnover, providing an opportunity to recycle tree biomass in situ prior to replanting an orchard. Whole orchard recycling (WOR) has potential as a carbon (C) negative cultural practice to build soil C storage, soil health, and orchard productivity. We tested the potential of this practice for long term C sequestration and hypothesized that associated co-benefits to soil health will enhance sustainability and resiliency of almond orchards to water-deficit conditions. We measured soil health metrics and productivity of an almond orchard following grinding and incorporation of woody biomass vs. burning of old orchard biomass 9 years after implementation. We also conducted a deficit irrigation trial with control and deficit irrigation (-20%) treatments to quantify shifts in tree water status and resilience. Biomass recycling led to higher yields and substantial improvement in soil functioning, including nutrient content, aggregation, porosity, and water retention. This practice also sequestered significantly higher levels of C in the topsoil (+5 t ha-1) compared to burning. We measured a 20% increase in irrigation water use efficiency and improved soil and tree water status under stress, suggesting that in situ biomass recycling can be considered as a climate smart practice in California irrigated almond systems.

We sequenced and comprehensively analysed the genomic architecture of 98 fluorescent pseudomonads isolated from different symptomatic and asymptomatic tissues of almond and a few other Prunus spp. Phylogenomic analyses, genome mining, field pathogenicity tests, and in vitro ice nucleation and antibiotic sensitivity tests were integrated to improve knowledge of the biology and management of bacterial blast and bacterial canker of almond. We identified Pseudomonas syringae pv. syringae, P. cerasi, and P. viridiflava as almond canker pathogens. P. syringae pv. syringae caused both canker and foliar (blast) symptoms. In contrast, P. cerasi and P. viridiflava only caused cankers, and P. viridiflava appeared to be a weak pathogen of almond. Isolates belonging to P. syringae pv. syringae were the most frequently isolated among the pathogenic species/pathovars, composing 75% of all pathogenic isolates. P. cerasi and P. viridiflava isolates composed 8.3 and 16.7% of the pathogenic isolates, respectively. Laboratory leaf infiltration bioassays produced results distinct from experiments in the field with both P. cerasi and P. syringae pv. syringae, causing significant necrosis and browning of detached leaves, whereas P. viridiflava conferred moderate effects. Genome mining revealed the absence of key epiphytic fitness-related genes in P. cerasi and P. viridiflava genomic sequences, which could explain the contrasting field and laboratory bioassay results. P. syringae pv. syringae and P. cerasi isolates harboured the ice nucleation protein, which correlated with the ice nucleation phenotype. Results of sensitivity tests to copper and kasugamycin showed a strong linkage to putative resistance genes. Isolates harbouring the ctpV gene showed resistance to copper up to 600 μg/ml. In contrast, isolates without the ctpV gene could not grow on nutrient agar amended with 200 μg/ml copper, suggesting ctpV can be used to phenotype copper resistance. All isolates were sensitive to kasugamycin at the label-recommended rate of 100μg/ml.