Methane (CH₄) is a potent greenhouse gas and the primary component of natural gas. The San Juan Basin (SJB) is one of the largest coal-bed methane producing regions in North America and, including gas production from conventional and shale sources, contributed ∼2% of U.S. natural gas production in 2015. In this work, we quantify the CH₄ flux from the SJB using continuous atmospheric sampling from aircraft collected during the TOPDOWN2015 field campaign in April 2015. Using five independent days of measurements and the aircraft-based mass balance method, we calculate an average CH₄ flux of 0.54 ± 0.20 Tg yr^-1 (1σ), in close agreement with the previous space-based estimate made for 2003-2009. These results agree within error with the U.S. EPA gridded inventory for 2012. These flights combined with the previous satellite study suggest CH₄ emissions have not changed. While there have been significant declines in natural gas production between measurements, recent increases in oil production in the SJB may explain why emission of CH₄ has not declined. Airborne quantification of outcrops where seepage occurs are consistent with ground-based studies that indicate these geological sources are a small fraction of the basin total (0.02-0.12 Tg yr^-1) and cannot explain basinwide consistent emissions from 2003 to 2015.