Two wetland plant-sediment microbial fuel cell systems (PSM1 and PSM2) and one wetland sediment microbial fuel cell system (SM) were constructed to investigate their electricity production performance and the simultaneous migration and transformation of arsenic and heavy metals in sediment and overlying water, arsenic and heavy metals uptake by plants. The bioelectricity generation was monitored for 175 days, and sediment samples were collected at three time points (64, 125 and 200 days) for the analysis. The results showed that plants improved the efficiency of the electricity production by the fuel cell system. The average output voltage was: PSM1 (0.32 V) > PSM2 (0.28 V) > SM (0.24 V)(P ≤ 0.05).The electricity production of the electrodes and the introduction of plants affected the mobility and transformation of As, Zn and Cd in the sediment, which contributed to their stability in the sediment and reduced the release of these metals into the overlying water column. The bioelectricity production process affected the bioavailability of arsenic and heavy metals in the sediment and attenuated metal uptake by plants, which indicated the potential for remediation of arsenic and heavy metals pollution in sediment.