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Open Access Publications from the University of California

An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology.

  • Author(s): Oberortner, Ernst
  • Evans, Robert
  • Meng, Xianwei
  • Nath, Sangeeta
  • Plahar, Hector
  • Simirenko, Lisa
  • Tarver, Angela
  • Deutsch, Samuel
  • Hillson, Nathan J
  • Cheng, Jan-Fang
  • et al.
Abstract

Biological computer-aided design and manufacturing (bioCAD/CAM) tools facilitate the design and build processes of engineering biological systems using iterative design-build-test-learn (DBTL) cycles. In this book chapter, we highlight some of the bioCAD/CAM tools developed and used at the US Department of Energy (DOE) Joint Genome Institute (JGI), Joint BioEnergy Institute (JBEI), and Agile BioFoundry (ABF). We demonstrate the use of these bioCAD/CAM tools on a common workflow for designing and building a multigene pathway in a hierarchical fashion. Each tool presented in this book chapter is specifically tailored to support one or more specific steps in a workflow, can be integrated with the others into design and build workflows, and can be deployed at academic, government, or commercial entities.

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