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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
- Zuffa, Simone;
- Schmid, Robin;
- Bauermeister, Anelize;
- P. Gomes, Paulo Wender;
- Caraballo-Rodriguez, Andres M;
- El Abiead, Yasin;
- Aron, Allegra T;
- Gentry, Emily C;
- Zemlin, Jasmine;
- Meehan, Michael J;
- Avalon, Nicole E;
- Cichewicz, Robert H;
- Buzun, Ekaterina;
- Terrazas, Marvic Carrillo;
- Hsu, Chia-Yun;
- Oles, Renee;
- Ayala, Adriana Vasquez;
- Zhao, Jiaqi;
- Chu, Hiutung;
- Kuijpers, Mirte CM;
- Jackrel, Sara L;
- Tugizimana, Fidele;
- Nephali, Lerato Pertunia;
- Dubery, Ian A;
- Madala, Ntakadzeni Edwin;
- Moreira, Eduarda Antunes;
- Costa-Lotufo, Leticia Veras;
- Lopes, Norberto Peporine;
- Rezende-Teixeira, Paula;
- Jimenez, Paula C;
- Rimal, Bipin;
- Patterson, Andrew D;
- Traxler, Matthew F;
- Pessotti, Rita de Cassia;
- Alvarado-Villalobos, Daniel;
- Tamayo-Castillo, Giselle;
- Chaverri, Priscila;
- Escudero-Leyva, Efrain;
- Quiros-Guerrero, Luis-Manuel;
- Bory, Alexandre Jean;
- Joubert, Juliette;
- Rutz, Adriano;
- Wolfender, Jean-Luc;
- Allard, Pierre-Marie;
- Sichert, Andreas;
- Pontrelli, Sammy;
- Pullman, Benjamin S;
- Bandeira, Nuno;
- Gerwick, William H;
- Gindro, Katia;
- Massana-Codina, Josep;
- Wagner, Berenike C;
- Forchhammer, Karl;
- Petras, Daniel;
- Aiosa, Nicole;
- Garg, Neha;
- Liebeke, Manuel;
- Bourceau, Patric;
- Kang, Kyo Bin;
- Gadhavi, Henna;
- de Carvalho, Luiz Pedro Sorio;
- Silva dos Santos, Mariana;
- Pérez-Lorente, Alicia Isabel;
- Molina-Santiago, Carlos;
- Romero, Diego;
- Franke, Raimo;
- Brönstrup, Mark;
- Vera Ponce de León, Arturo;
- Pope, Phillip Byron;
- La Rosa, Sabina Leanti;
- La Barbera, Giorgia;
- Roager, Henrik M;
- Laursen, Martin Frederik;
- Hammerle, Fabian;
- Siewert, Bianka;
- Peintner, Ursula;
- Licona-Cassani, Cuauhtemoc;
- Rodriguez-Orduña, Lorena;
- Rampler, Evelyn;
- Hildebrand, Felina;
- Koellensperger, Gunda;
- Schoeny, Harald;
- Hohenwallner, Katharina;
- Panzenboeck, Lisa;
- Gregor, Rachel;
- O’Neill, Ellis Charles;
- Roxborough, Eve Tallulah;
- Odoi, Jane;
- Bale, Nicole J;
- Ding, Su;
- Sinninghe Damsté, Jaap S;
- Guan, Xue Li;
- Cui, Jerry J;
- Ju, Kou-San;
- Silva, Denise Brentan;
- Silva, Fernanda Motta Ribeiro;
- da Silva, Gilvan Ferreira;
- Koolen, Hector HF;
- Grundmann, Carlismari;
- Clement, Jason A;
- Mohimani, Hosein;
- Broders, Kirk;
- McPhail, Kerry L;
- Ober-Singleton, Sidnee E;
- Rath, Christopher M;
- McDonald, Daniel;
- Knight, Rob;
- Wang, Mingxun;
- Dorrestein, Pieter C
- et al.
Published Web Location
https://doi.org/10.1038/s41564-023-01575-9Abstract
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms' role in ecology and human health.
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