UCLA

Proteins have interesting mechanical properties in addition to the remarkable functionality. For example, Guanylate kinase is an enzyme that catalyzes Guano- sine monophosphate (GMP) to Guanosine diphosphate (GDP) conversion and this enzyme is approximately 5 nm in size. A gold nano particle of similar size shows linear elasticity for strains up to ∼ 0.1% and shows plastic deformation beyond that, whereas the enzyme Guanylate kinase can have strains up to 1 % with reversible deformation. Our experiments show many different regimes of the mechanical response before the plastic deformation of these proteins. In this dissertation, I study the materials properties of two classes of proteins, an ion channel protein and a transferase, which is a globular protein. The experimental techniques to study the materials properties of these proteins were uniquely de- veloped at the Zocchi lab. Therefore, we were able to observe previously unknown characteristics of these folded proteins.

The mechanical properties of the voltage gated potassium channel KvAP was studied by applying AC depolarizing voltages. This technique gave new informa- tion about the system that was not seen in the previous studies. These previous experiments were based on applying DC depolarizing voltage steps across the membrane to study the ionic current. By monitoring the ionic current at different depolarizing voltage steps, the DC gating process of the channel could be under-

stood. We probed the channel using AC depolarizing signals instead of DC pulses and the ionic current revealed new behaviors, which cannot be predicted with the DC response. We found that the conformational motion of the voltage sensing domain of the ion channel shows internal dissipation. Further, a new non lin- earity in the dissipation parameter was found in which the dissipation parameter increased with the shear rate of the applied force.

Previous studies at the Zocchi lab used a nano rheology experiment on the protein Guanylate kinase to study the mechanical properties of a globular pro- tein. The protein was subjected to a mechanical force and the deformation was measured with sub-Angstrom resolution. We found that the protein shows a linear elasticity regime for low forcing and viscoelastic behavior for high forcing. The in- ternal viscosity of the protein is due to the internal dissipation of the protein. This dissertation takes the work on nano rheology of proteins further by studying the temperature effect on the materials properties of the protein and the contribution of the surface of the protein to the observed mechanics.

In addition to studying the materials properties of proteins, we used proteins to design new biomimetic systems. The first system covered in this dissertation is the development of a novel sensor platform for molecules. In this sensor, we detect the change in the stiffness of the substrate upon binding a target rather than the usual scheme of detecting the change in mass upon binding of a target. By combining the nano rheology setup with localized surface plasmon resonance, this sensor platform yields a very robust signal. The other biomimetic system that is discussed here is an artificial axon is constructed with ion channels and lipid bilayers.