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Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil
- Rice, Marlen C;
- Norton, Jeanette M;
- Valois, Frederica;
- Bollmann, Annette;
- Bottomley, Peter J;
- Klotz, Martin G;
- Laanbroek, Hendrikus J;
- Suwa, Yuichi;
- Stein, Lisa Y;
- Sayavedra-Soto, Luis;
- Woyke, Tanja;
- Shapiro, Nicole;
- Goodwin, Lynne A;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Kyrpides, Nikos;
- Varghese, Neha;
- Mikhailova, Natalia;
- Markowitz, Victor;
- Palaniappan, Krishna;
- Ivanova, Natalia;
- Stamatis, Dimitrios;
- Reddy, TBK;
- Ngan, Chew Yee;
- Daum, Chris
- et al.
Published Web Location
https://doi.org/10.1186/s40793-016-0168-4Abstract
Nitrosospira briensis C-128 is an ammonia-oxidizing bacterium isolated from an acid agricultural soil. N. briensis C-128 was sequenced with PacBio RS technologies at the DOE-Joint Genome Institute through their Community Science Program (2010). The high-quality finished genome contains one chromosome of 3.21 Mb and no plasmids. We identified 3073 gene models, 3018 of which are protein coding. The two-way average nucleotide identity between the chromosomes of Nitrosospira multiformis ATCC 25196 and Nitrosospira briensis C-128 was found to be 77.2 %. Multiple copies of modules encoding chemolithotrophic metabolism were identified in their genomic context. The gene inventory supports chemolithotrophic metabolism with implications for function in soil environments.
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