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A novel DPH5-related diphthamide-deficiency syndrome causing embryonic lethality or profound neurodevelopmental disorder
- Shankar, Suma P;
- Grimsrud, Kristin;
- Lanoue, Louise;
- Egense, Alena;
- Willis, Brandon;
- Hörberg, Johanna;
- AlAbdi;
- Mayer, Klaus;
- Ütkür, Koray;
- Monaghan, Kristin G;
- Krier, Joel;
- Stoler, Joan;
- Alnemer, Maha;
- Shankar, Prabhu R;
- Schaffrath, Raffael;
- Alkuraya, Fowzan S;
- Brinkmann, Ulrich;
- Eriksson, Leif A;
- Lloyd, Kent;
- Rauen, Katherine A;
- Network, Undiagnosed Diseases;
- Acosta, Maria T;
- Adam, Margaret;
- Adams, David R;
- Alvey, Justin;
- Amendola, Laura;
- Andrews, Ashley;
- Ashley, Euan A;
- Azamian, Mahshid S;
- Bacino, Carlos A;
- Bademci, Guney;
- Balasubramanyam, Ashok;
- Baldridge, Dustin;
- Bale, Jim;
- Bamshad, Michael;
- Barbouth, Deborah;
- Bayrak-Toydemir, Pinar;
- Beck, Anita;
- Beggs, Alan H;
- Behrens, Edward;
- Bejerano, Gill;
- Bennet, Jimmy;
- Berg-Rood, Beverly;
- Bernstein, Jonathan A;
- Berry, Gerard T;
- Bican, Anna;
- Bivona, Stephanie;
- Blue, Elizabeth;
- Bohnsack, John;
- Bonner, Devon;
- Botto, Lorenzo;
- Boyd, Brenna;
- Briere, Lauren C;
- Brokamp, Elly;
- Brown, Gabrielle;
- Burke, Elizabeth A;
- Burrage, Lindsay C;
- Butte, Manish J;
- Byers, Peter;
- Byrd, William E;
- Carey, John;
- Carrasquillo, Olveen;
- Cassini, Thomas;
- Chang, Ta Chen Peter;
- Chanprasert, Sirisak;
- Chao, Hsiao-Tuan;
- Clark, Gary D;
- Coakley, Terra R;
- Cobban, Laurel A;
- Cogan, Joy D;
- Coggins, Matthew;
- Cole, F Sessions;
- Colley, Heather A;
- Cooper, Cynthia M;
- Cope, Heidi;
- Craigen, William J;
- Crouse, Andrew B;
- Cunningham, Michael;
- D'Souza, Precilla;
- Dai, Hongzheng;
- Dasari, Surendra;
- Davis, Joie;
- Dayal, Jyoti G;
- Deardorff, Matthew;
- Dell'Angelica, Esteban C;
- Dipple, Katrina;
- Doherty, Daniel;
- Dorrani, Naghmeh;
- Doss, Argenia L;
- Douine, Emilie D;
- Duncan, Laura;
- Earl, Dawn;
- Eckstein, David J;
- Emrick, Lisa T;
- Eng, Christine M;
- Esteves, Cecilia;
- Falk, Marni;
- Fernandez, Liliana;
- Fieg, Elizabeth L;
- Fisher, Paul G;
- Fogel, Brent L;
- Forghani, Irman;
- Gahl, William A;
- Glass, Ian;
- Gochuico, Bernadette;
- Godfrey, Rena A;
- Golden-Grant, Katie;
- Goldrich, Madison P;
- Grajewski, Alana;
- Gutierrez, Irma;
- Hadley, Don;
- Hahn, Sihoun;
- Hamid, Rizwan;
- Hassey, Kelly;
- Hayes, Nichole;
- High, Frances;
- Hing, Anne;
- Hisama, Fuki M;
- Holm, Ingrid A;
- Hom, Jason;
- Horike-Pyne, Martha;
- Huang, Alden;
- Huang, Yong;
- Introne, Wendy;
- Isasi, Rosario;
- Izumi, Kosuke;
- Jamal, Fariha;
- Jarvik, Gail P;
- Jarvik, Jeffrey;
- Jayadev, Suman;
- Jean-Marie, Orpa;
- Jobanputra, Vaidehi;
- Karaviti, Lefkothea;
- Kennedy, Jennifer;
- Ketkar, Shamika;
- Kiley, Dana;
- Kilich, Gonench;
- Kobren, Shilpa N;
- Kohane, Isaac S;
- Kohler, Jennefer N;
- Krakow, Deborah;
- Krasnewich, Donna M;
- Kravets, Elijah;
- Korrick, Susan;
- Koziura, Mary;
- Lalani, Seema R;
- Lam, Byron;
- Lam, Christina;
- LaMoure, Grace L;
- Lanpher, Brendan C;
- Lanza, Ian R;
- LeBlanc, Kimberly;
- Lee, Brendan H;
- Levitt, Roy;
- Lewis, Richard A;
- Liu, Pengfei;
- Liu, Xue Zhong;
- Longo, Nicola;
- Loo, Sandra K;
- Loscalzo, Joseph;
- Maas, Richard L;
- Macnamara, Ellen F;
- MacRae, Calum A;
- Maduro, Valerie V;
- Mak, Bryan C;
- Malicdan, May Christine V;
- Mamounas, Laura A;
- Manolio, Teri A;
- Mao, Rong;
- Maravilla, Kenneth;
- Marom, Ronit;
- Marth, Gabor;
- Martin, Beth A;
- Martin, Martin G;
- Martínez-Agosto, Julian A;
- Marwaha, Shruti;
- McCauley, Jacob;
- McConkie-Rosell, Allyn;
- McCray, Alexa T;
- McGee, Elisabeth;
- Mefford, Heather;
- Merritt, J Lawrence;
- Might, Matthew;
- Mirzaa, Ghayda;
- Morava, Eva;
- Moretti, Paolo M;
- Nakano-Okuno, Mariko;
- Nelson, Stan F;
- Newman, John H;
- Nicholas, Sarah K;
- Nickerson, Deborah;
- Nieves-Rodriguez, Shirley;
- Novacic, Donna;
- Oglesbee, Devin;
- Orengo, James P;
- Pace, Laura;
- Pak, Stephen;
- Pallais, J Carl;
- Palmer, Christina GS;
- Papp, Jeanette C;
- Parker, Neil H;
- Phillips, John A;
- Posey, Jennifer E;
- Potocki, Lorraine;
- Pusey, Barbara N;
- Quinlan, Aaron;
- Raskind, Wendy;
- Raja, Archana N;
- Rao, Deepak A;
- Raper, Anna;
- Renteria, Genecee;
- Reuter, Chloe M;
- Rives, Lynette;
- Robertson, Amy K;
- Rodan, Lance H;
- Rosenfeld, Jill A;
- Rosenwasser, Natalie;
- Rossignol, Francis;
- Ruzhnikov, Maura;
- Sacco, Ralph;
- Sampson, Jacinda B;
- Saporta, Mario;
- Scott, C Ron;
- Schaechter, Judy;
- Schedl, Timothy;
- Schoch, Kelly;
- Scott, Daryl A;
- Shashi, Vandana;
- Shin, Jimann;
- Silverman, Edwin K;
- Sinsheimer, Janet S;
- Sisco, Kathy;
- Smith, Edward C;
- Smith, Kevin S;
- Solem, Emily;
- Solnica-Krezel, Lilianna;
- Solomon, Ben;
- Spillmann, Rebecca C;
- Stoler, Joan M;
- Sullivan, Jennifer A;
- Sullivan, Kathleen;
- Sun, Angela;
- Sutton, Shirley;
- Sweetser, David A;
- Sybert, Virginia;
- Tabor, Holly K;
- Tan, Amelia LM;
- Queenie, K-G;
- Tan, Mustafa Tekin;
- Telischi, Fred;
- Thorson, Willa;
- Tifft, Cynthia J;
- Toro, Camilo;
- Tran, Alyssa A;
- Tucker, Brianna M;
- Urv, Tiina K;
- Vanderver, Adeline;
- Velinder, Matt;
- Viskochil, Dave;
- Vogel, Tiphanie P;
- Wahl, Colleen E;
- Wallace, Stephanie;
- Walley, Nicole M;
- Walker, Melissa;
- Wambach, Jennifer;
- Wan, Jijun;
- Wang, Lee-kai;
- Wangler, Michael F;
- Ward, Patricia A;
- Wegner, Daniel;
- Weisz-Hubshman, Monika;
- Wener, Mark;
- Wenger, Tara;
- Perry, Katherine Wesseling;
- Westerfield, Monte;
- Wheeler, Matthew T;
- Whitlock, Jordan;
- Wolfe, Lynne A;
- Worley, Kim;
- Xiao, Changrui;
- Yamamoto, Shinya;
- Yang, John;
- Zastrow, Diane B;
- Zhang, Zhe;
- Zhao, Chunli;
- Zuchner, Stephan;
- Bellen, Hugo;
- Mahoney, Rachel
Published Web Location
https://doi.org/10.1016/j.gim.2022.03.014Abstract
PURPOSE: Diphthamide is a post-translationally modified histidine essential for messenger RNA translation and ribosomal protein synthesis. We present evidence for DPH5 as a novel cause of embryonic lethality and profound neurodevelopmental delays (NDDs). METHODS: Molecular testing was performed using exome or genome sequencing. A targeted Dph5 knockin mouse (C57BL/6Ncrl-Dph5em1Mbp/Mmucd) was created for a DPH5 p.His260Arg homozygous variant identified in 1 family. Adenosine diphosphate-ribosylation assays in DPH5-knockout human and yeast cells and in silico modeling were performed for the identified DPH5 potential pathogenic variants. RESULTS: DPH5 variants p.His260Arg (homozygous), p.Asn110Ser and p.Arg207Ter (heterozygous), and p.Asn174LysfsTer10 (homozygous) were identified in 3 unrelated families with distinct overlapping craniofacial features, profound NDDs, multisystem abnormalities, and miscarriages. Dph5 p.His260Arg homozygous knockin was embryonically lethal with only 1 subviable mouse exhibiting impaired growth, craniofacial dysmorphology, and multisystem dysfunction recapitulating the human phenotype. Adenosine diphosphate-ribosylation assays showed absent to decreased function in DPH5-knockout human and yeast cells. In silico modeling of the variants showed altered DPH5 structure and disruption of its interaction with eEF2. CONCLUSION: We provide strong clinical, biochemical, and functional evidence for DPH5 as a novel cause of embryonic lethality or profound NDDs with multisystem involvement and expand diphthamide-deficiency syndromes and ribosomopathies.
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