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Open Access Publications from the University of California

LBL Publications

Lawrence Berkeley National Laboratory (Berkeley Lab) has been a leader in science and engineering research for more than 70 years. Located on a 200 acre site in the hills above the Berkeley campus of the University of California, overlooking the San Francisco Bay, Berkeley Lab is a U.S. Department of Energy (DOE) National Laboratory managed by the University of California. It has an annual budget of nearly $480 million (FY2002) and employs a staff of about 4,300, including more than a thousand students.

Berkeley Lab conducts unclassified research across a wide range of scientific disciplines with key efforts in fundamental studies of the universe; quantitative biology; nanoscience; new energy systems and environmental solutions; and the use of integrated computing as a tool for discovery. It is organized into 17 scientific divisions and hosts four DOE national user facilities. Details on Berkeley Lab's divisions and user facilities can be viewed here.

Cover page of Helping Faculty Teach Software Performance Engineering

Helping Faculty Teach Software Performance Engineering

(2024)

Over the academic year 2022–23, we discussed the teaching of software performance engineering with more than a dozen faculty across North America and beyond. Our outreach was centered on research-focused faculty with an existing interest in this course material. These discussions revealed an enthusiasm for making software performance engineering a more prominent part of a curriculum for computer scientists and engineers. Here, we discuss how MIT’s longstanding efforts in this area may serve as a launching point for community development of a software performance engineering curriculum, challenges in and solutions for providing the necessary infrastructure to universities, and future directions.

AutoCT: Automated CT registration, segmentation, and quantification

(2024)

The processing and analysis of computed tomography (CT) imaging is important for both basic scientific development and clinical applications. In AutoCT, we provide a comprehensive pipeline that integrates an end-to-end automatic preprocessing, registration, segmentation, and quantitative analysis of 3D CT scans. The engineered pipeline enables atlas-based CT segmentation and quantification leveraging diffeomorphic transformations through efficient forward and inverse mappings. The extracted localized features from the deformation field allow for downstream statistical learning that may facilitate medical diagnostics. On a lightweight and portable software platform, AutoCT provides a new toolkit for the CT imaging community to underpin the deployment of artificial intelligence-driven applications.

Cover page of Decarbonization of heat pump dual fuel systems using a practical model predictive control: Field demonstration in a small commercial building

Decarbonization of heat pump dual fuel systems using a practical model predictive control: Field demonstration in a small commercial building

(2024)

In the transition from fossil fuel to electrified heating, a concerning trend is emerging in certain regions of the US. Owners of buildings with gas-based systems leave them in place after adding heat pumps (HPs). Existing control solutions for these hybrid (dual fuel) systems are rudimentary and fall short of realizing the full carbon reduction potential of these systems. Model predictive control (MPC) is often regarded as the benchmark for achieving optimal control in integrated systems. However, in the case of small-medium commercial buildings (SMCBs), the control and communication infrastructure required to facilitate the implementation of such advanced controls is often lacking. This paper presents a field implementation of easy-to-deploy MPC for a dual fuel heating system consisting of HPs and a gas-fired furnace (GF) for SMCBs. The control system is deployed on an open-source middleware platform and utilizes low-cost sensor devices to be used for real SMCBs without major retrofits. We demonstrated this MPC in a real office building with 5 HPs and 1 GF for 2 months. The test results showed that MPC reduced 27% of cost while completely eliminating GF usage by shifting 23% of the thermal load from occupied-peak time to non-occupied-non-peak times.

Cover page of Reinvented: An Attosecond Chemist

Reinvented: An Attosecond Chemist

(2024)

Attosecond science requires a substantial rethinking of how to make measurements on very short timescales; how to acquire the necessary equipment, technology, and personnel; and how to build a set of laboratories for such experiments. This entails a rejuvenation of the author in many respects, in the laboratory itself, with regard to students and postdocs, and in generating funding for research. It also brings up questions of what it means to do attosecond science, and the discovery of the power of X-ray spectroscopy itself, which complements the short timescales addressed. The lessons learned, expressed in the meanderings of this autobiographical article, may be of benefit to others who try to reinvent themselves. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 75 is April 2024. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

GENESIS: Gamma Energy Neutron Energy Spectrometer for Inelastic Scattering

(2024)

Improved neutron inelastic scattering cross section data are needed to inform integral benchmark studies and advance applications in a wide variety of areas including nuclear energy, stockpile stewardship, nonproliferation, and space exploration. Neutron inelastic scattering also serves as a non-selective probe of low-lying nuclear structure. To help meet these needs, the Gamma Energy Neutron Energy Spectrometer for Inelastic Scattering (GENESIS) was constructed at the 88-Inch Cyclotron at Lawrence Berkeley National Laboratory. This array couples high-resolution γ-ray detectors and fast neutron detectors to achieve single and coincident n/γ detection over a broad energy range. The current configuration of the array includes 26 organic liquid scintillators and four high-purity germanium detectors (two single-crystal and two four-crystal CLOVER detectors with two-fold segmentation). The array was constructed with minimal supporting material and designed to cover a wide range of secondary particle angles and energies with limited inter-element scattering. Data acquisition is accomplished using Mesytec MDPP-16 multi-channel high-resolution digital pulse processing modules. The array characteristics, including γ-ray and neutron energy resolution, timing resolution, and detection efficiency were measured and used to validate a GEANT4 model of the array. The primary sources of neutron background and the uncertainties in the determination of incident and secondary neutron energy were assessed. GENESIS provides a new capability to address nuclear data needs and facilitates the advancement of a wide range of nuclear applications.

Cover page of A Program Design Combining Community Solar and Weatherization for Manufactured Homes in Michigan

A Program Design Combining Community Solar and Weatherization for Manufactured Homes in Michigan

(2024)

The Michigan Department of Environment, Great Lakes, and Energy (EGLE) is interested in combining community solar with weatherization programs for manufactured homes. To collect program strategies, EGLE made a request for technical assistance from the US Department of Energy’s National Community Solar Partnership (NCSP). Lawrence Berkeley National Lab developed this study in response. It briefly reviews issues relevant to the question, attempts to lay out a methodology for more in-depth analysis, and provides some recommendations for program design and implementation. While the research is specific to Michigan, the recommendations and methodologies could serve as an example for other states and regions. The paper first provides an overview of manufactured home communities in Michigan, with a discussion of demographics and energy issues they face. It then discusses weatherization opportunities for manufactured homes, opportunities for community solar, and opportunities for combining the two. The methodology proposed is intended to help EGLE: -Identify priority locations, -Set eligibility criteria for communities and households, and -Make the most of federal and other funding sources The paper concludes with recommendations for a program that combines community solar with efficient electrification of manufactured homes to reduce the burden of the largest source of energy expenditure in Michigan, winter heating bills. Specifically, it envisions community solar subscriptions for occupants of manufactured homes that have been converted to high-efficiency cold weather heat pumps. The combination can be managed to alleviate seasonal variations in both solar and heating bills, such as through an annualized “budget billing” program.

Cover page of Automated Defense

Automated Defense

(2024)

NSF Security Summit on AI and Cyber Defense

Cover page of The FBXW7-binding sites on FAM83D are potential targets for cancer therapy.

The FBXW7-binding sites on FAM83D are potential targets for cancer therapy.

(2024)

Increasing evidence shows the oncogenic function of FAM83D in human cancer, but how FAM83D exerts its oncogenic function remains largely unclear. Here, we investigated the importance of FAM83D/FBXW7 interaction in breast cancer (BC). We systematically mapped the FBXW7-binding sites on FAM83D through a comprehensive mutational analysis together with co-immunoprecipitation assay. Mutations at the FBXW7-binding sites on FAM83D led to that FAM83D lost its capability to promote the ubiquitination and proteasomal degradation of FBXW7; cell proliferation, migration, and invasion in vitro; and tumor growth and metastasis in vivo, indicating that the FBXW7-binding sites on FAM83D are essential for its oncogenic functions. A meta-evaluation of FAM83D revealed that the prognostic impact of FAM83D was independent on molecular subtypes. The higher expression of FAM83D has poorer prognosis. Moreover, high expression of FAM83D confers resistance to chemotherapy in BCs, which is experimentally validated in vitro. We conclude that identification of FBXW7-binding sites on FAM83D not only reveals the importance for FAM83D oncogenic function, but also provides valuable insights for drug target.