Computer Science and Engineering Department Open Access Policy Deposits

Parent: Bourns College of Engineering

eScholarship stats: Breakdown by Item for June through September, 2026

ItemTitleTotal requestsDownloadView-only%Dnld
8606f22rOn the Correctness of Metadata-Based SBOM Generation: A Differential Analysis Approach44031912172.5%
6tx1g53vIntegrative analysis of multimodal mass spectrometry data in MZmine 339823716159.5%
7xh2w6pwFeature-based molecular networking in the GNPS analysis environment35112222934.8%
8q63m69fSharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking2997922026.4%
9d4967pmDrug target prediction through deep learning functional representation of gene signatures29511917640.3%
7gs1w3pbA chromosome conformation capture ordered sequence of the barley genome27716011757.8%
86x0713xFine-tuned protein language model identifies antigen-specific B cell receptors from immune repertoires2451766971.8%
7wn084ztA view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)24313211154.3%
7b4425nrMatrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One Hundred Million Barrier for Time Series Motifs and Joins2257515033.3%
23p905b3DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data2237215132.3%
1dr6q4x6Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica2211338860.2%
08s0n0j5Babesia duncani multi-omics identifies virulence factors and drug targets21211010251.9%
0tt974fvGNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser2101476370.0%
4gb5t10zProbabilistic Path Prioritization for Hybrid Fuzzing2058012539.0%
9tp855xwReverse metabolomics for the discovery of chemical structures from humans2027013234.7%
31m0z7qfMustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation1947711739.7%
4dv456qxAuthor Correction: A universal language for finding mass spectrometry data patterns1751815710.3%
2kx4r5g7Somatic SF3B1 hotspot mutation in prolactinomas1642813617.1%
6hg3w5rcDNS Exfiltration Guided by Generative Adversarial Networks162946858.0%
4n64r36rBalanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity1575110632.5%
2bt8n2ssChemStor: Using Formal Methods To Guarantee Safe Storage and Disposal of Chemicals1511613510.6%
2gd202bjProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity1503511523.3%
739415xmHigher order divergence-free and curl-free interpolation on MAC grids146539336.3%
28x5h3tnA universal language for finding mass spectrometry data patterns145578839.3%
6xg1852dHigh-Level Language Tools for Reconfigurable Computing144648044.4%
3tv4530nA mini-review of single-cell Hi-C embedding methods142459731.7%
79t6410zEnhancing untargeted metabolomics using metadata-based source annotation141548738.3%
11z974mjIon identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment139697049.6%
4xx8p7nhEnabling pan-repository reanalysis for big data science of public metabolomics data138489034.8%
1s4297xtTRFill: synergistic use of HiFi and Hi-C sequencing enables accurate assembly of tandem repeats for population-level analysis.134498536.6%
47c9p5cnNPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters134508437.3%
86n1p4qmImpact of various high fat diets on gene expression and the microbiome across the mouse intestines134924268.7%
6qg0w6swSHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing133448933.1%
3jh0x2hhRecent developments in microfluidic large scale integration132765657.6%
106675xjSCALE method for single-cell ATAC-seq analysis via latent feature extraction130646649.2%
7j43n4qrEfficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph1302110916.2%
9006p69gSkull-stripping with machine learning deformable organisms1302610420.0%
5kt560ffMSTmap Online: enhanced usability, visualization, and accessibility127398830.7%
1jn5p5sfComprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes126576945.2%
2hn3z2rgPrediction of DNA Methylation With Long-Range State-Space Models126408631.7%
0rn2j1x1ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization125586746.4%
6nh112gzNPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products123339026.8%
71k8c9hgENVnet provides a global molecular resource of dissolved organic matter1231810514.6%
2nd2352bTRFill: synergistic use of HiFi and Hi-C sequencing enables accurate assembly of tandem repeats for population-level analysis122715158.2%
4b35w89tEvaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform122645852.5%
0q63c9z2TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats120497140.8%
2cv9x5hnRAmbler: de novo genome assembly of complex repetitive regions120111099.2%
79m5n368ReDU: a framework to find and reanalyze public mass spectrometry data119308925.2%
4mx9j6pdMOPSA: A microfluidics-optimized particle simulation algorithm118982083.1%
02z063spA Mid‐Density Single‐Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)117506742.7%
Top
Note: Due to the evolving nature of web traffic, the data presented here should be considered approximate and subject to revision. Learn more.