Computer Science and Engineering Department Open Access Policy Deposits

eScholarship stats: Breakdown by Item for May through August, 2026

Item	Title	Total requests	Download	View-only	%Dnld
6tx1g53v	Integrative analysis of multimodal mass spectrometry data in MZmine 3	429	259	170	60.4%
8606f22r	On the Correctness of Metadata-Based SBOM Generation: A Differential Analysis Approach	377	258	119	68.4%
8q63m69f	Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking	364	125	239	34.3%
7xh2w6pw	Feature-based molecular networking in the GNPS analysis environment	330	139	191	42.1%
7gs1w3pb	A chromosome conformation capture ordered sequence of the barley genome	324	202	122	62.3%
23p905b3	DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data	323	155	168	48.0%
9d4967pm	Drug target prediction through deep learning functional representation of gene signatures	316	136	180	43.0%
7wn084zt	A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)	312	172	140	55.1%
08s0n0j5	Babesia duncani multi-omics identifies virulence factors and drug targets	281	146	135	52.0%
86x0713x	Fine-tuned protein language model identifies antigen-specific B cell receptors from immune repertoires	281	201	80	71.5%
1dr6q4x6	Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica	268	131	137	48.9%
4gb5t10z	Probabilistic Path Prioritization for Hybrid Fuzzing	249	86	163	34.5%
7b4425nr	Matrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One Hundred Million Barrier for Time Series Motifs and Joins	235	95	140	40.4%
69w275j2	How to build better memory training games	233	127	106	54.5%
31m0z7qf	Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation	227	92	135	40.5%
0tt974fv	GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser	211	151	60	71.6%
93k4j92j	On the prediction of non-CG DNA methylation using machine learning	206	129	77	62.6%
9tp855xw	Reverse metabolomics for the discovery of chemical structures from humans	202	73	129	36.1%
6hg3w5rc	DNS Exfiltration Guided by Generative Adversarial Networks	198	120	78	60.6%
2hn3z2rg	Prediction of DNA Methylation With Long-Range State-Space Models	193	75	118	38.9%
1sj3d7f5	<i>Babesia hegotelforum</i> sp. nov., a zoonotic <i>Babesia</i> species previously referred to as <i>Babesia sp</i>. <i>MO1</i>.	188	75	113	39.9%
2bt8n2ss	ChemStor: Using Formal Methods To Guarantee Safe Storage and Disposal of Chemicals	184	41	143	22.3%
2kx4r5g7	Somatic SF3B1 hotspot mutation in prolactinomas	180	29	151	16.1%
739415xm	Higher order divergence-free and curl-free interpolation on MAC grids	177	76	101	42.9%
6xg1852d	High-Level Language Tools for Reconfigurable Computing	175	85	90	48.6%
79t6410z	Enhancing untargeted metabolomics using metadata-based source annotation	175	67	108	38.3%
02z063sp	A Mid‐Density Single‐Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)	169	65	104	38.5%
2gd202bj	ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity	168	68	100	40.5%
3jh0x2hh	Recent developments in microfluidic large scale integration	164	83	81	50.6%
86n1p4qm	Impact of various high fat diets on gene expression and the microbiome across the mouse intestines	164	111	53	67.7%
0qj532xn	Comparative structural analysis of protein complexes with SPICE.	163	50	113	30.7%
3tv4530n	A mini-review of single-cell Hi-C embedding methods	162	47	115	29.0%
6qg0w6sw	SHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing	162	64	98	39.5%
6nh112gz	NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products	161	46	115	28.6%
4dv456qx	Author Correction: A universal language for finding mass spectrometry data patterns	160	21	139	13.1%
0080h493	Leveraging off higher plant phylogenetic insights for antiplasmodial drug discovery	152	48	104	31.6%
4n64r36r	Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity	151	50	101	33.1%
11z974mj	Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment	150	69	81	46.0%
28x5h3tn	A universal language for finding mass spectrometry data patterns	150	66	84	44.0%
5nq8r43t	Towards optimal selection of ultra-deep sequencing reads for de novo genome assembly	149	52	97	34.9%
0q63c9z2	TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats	148	79	69	53.4%
4b35w89t	Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform	147	79	68	53.7%
8xc8s9df	Exploiting a novel algorithm and GPUs to break the ten quadrillion pairwise comparisons barrier for time series motifs and joins	146	50	96	34.2%
0282t6n7	H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids	145	29	116	20.0%
0z839098	Comprehensive Memory Safety Validation: An Alternative Approach to Memory Safety	145	62	83	42.8%
2vb1s2kb	Lightweight Coordinated Sampling for Dynamic Flows under Budget Constraints	145	60	85	41.4%
4mx9j6pd	MOPSA: A microfluidics-optimized particle simulation algorithm	144	112	32	77.8%
31t6m7w8	Using printer ink color to control the behavior of paper microfluidics	143	63	80	44.1%
1jn5p5sf	Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes	140	57	83	40.7%
4xx8p7nh	Enabling pan-repository reanalysis for big data science of public metabolomics data	140	50	90	35.7%

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