Computer Science and Engineering Department Open Access Policy Deposits

eScholarship stats: Breakdown by Item for March through June, 2026

Item	Title	Total requests	Download	View-only	%Dnld
8q63m69f	Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking	429	173	256	40.3%
86x0713x	Fine-tuned protein language model identifies antigen-specific B cell receptors from immune repertoires	365	248	117	67.9%
6tx1g53v	Integrative analysis of multimodal mass spectrometry data in MZmine 3	364	197	167	54.1%
7xh2w6pw	Feature-based molecular networking in the GNPS analysis environment	354	157	197	44.4%
7gs1w3pb	A chromosome conformation capture ordered sequence of the barley genome	348	204	144	58.6%
08s0n0j5	Babesia duncani multi-omics identifies virulence factors and drug targets	334	153	181	45.8%
23p905b3	DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data	325	181	144	55.7%
8606f22r	On the Correctness of Metadata-Based SBOM Generation: A Differential Analysis Approach	306	209	97	68.3%
1sj3d7f5	<i>Babesia hegotelforum</i> sp. nov., a zoonotic <i>Babesia</i> species previously referred to as <i>Babesia sp</i>. <i>MO1</i>.	299	110	189	36.8%
7wn084zt	A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)	298	159	139	53.4%
4gb5t10z	Probabilistic Path Prioritization for Hybrid Fuzzing	286	99	187	34.6%
1dr6q4x6	Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica	282	121	161	42.9%
2hn3z2rg	Prediction of DNA Methylation With Long-Range State-Space Models	276	102	174	37.0%
6hg3w5rc	DNS Exfiltration Guided by Generative Adversarial Networks	266	153	113	57.5%
02z063sp	A Mid‐Density Single‐Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)	264	93	171	35.2%
9d4967pm	Drug target prediction through deep learning functional representation of gene signatures	259	108	151	41.7%
7b4425nr	Matrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One Hundred Million Barrier for Time Series Motifs and Joins	256	102	154	39.8%
93k4j92j	On the prediction of non-CG DNA methylation using machine learning	250	152	98	60.8%
0080h493	Leveraging off higher plant phylogenetic insights for antiplasmodial drug discovery	242	90	152	37.2%
69w275j2	How to build better memory training games	233	131	102	56.2%
8gb8n34b	Babesia BdFE1 esterase is required for the anti-parasitic activity of the ACE inhibitor fosinopril	231	75	156	32.5%
5nq8r43t	Towards optimal selection of ultra-deep sequencing reads for de novo genome assembly	228	65	163	28.5%
739415xm	Higher order divergence-free and curl-free interpolation on MAC grids	222	87	135	39.2%
4dv456qx	Author Correction: A universal language for finding mass spectrometry data patterns	209	36	173	17.2%
6qg0w6sw	SHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing	209	96	113	45.9%
31m0z7qf	Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation	208	98	110	47.1%
70z8g918	The Benefits and Challenges of Implementing Motivational Features to Boost Cognitive Training Outcome	206	53	153	25.7%
79t6410z	Enhancing untargeted metabolomics using metadata-based source annotation	206	70	136	34.0%
3tv4530n	A mini-review of single-cell Hi-C embedding methods	203	64	139	31.5%
0tt974fv	GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser	202	124	78	61.4%
1jn5p5sf	Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes	201	75	126	37.3%
6nh112gz	NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products	201	59	142	29.4%
11z974mj	Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment	197	74	123	37.6%
6xg1852d	High-Level Language Tools for Reconfigurable Computing	191	92	99	48.2%
0282t6n7	H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids	189	54	135	28.6%
3rk8854c	Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics	189	87	102	46.0%
0rn2j1x1	ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization	188	84	104	44.7%
4b35w89t	Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform	185	93	92	50.3%
8xc8s9df	Exploiting a novel algorithm and GPUs to break the ten quadrillion pairwise comparisons barrier for time series motifs and joins	184	71	113	38.6%
9tp855xw	Reverse metabolomics for the discovery of chemical structures from humans	181	73	108	40.3%
9b5681n9	Recent Advances in Securing Networked Systems	179	76	103	42.5%
0n5635cx	Predicting Antibody–Antigen Interactions with Structure-Aware LLMs: Insights from SARS-CoV‑2 Variants	178	86	92	48.3%
2gd202bj	ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity	178	76	102	42.7%
23n9c3q0	A model checking-based security analysis framework for IoT systems	177	59	118	33.3%
38z520bz	Comprehensive benchmarking and ensemble approaches for metagenomic classifiers	177	76	101	42.9%
4bq907gr	Network Topology Evaluation and Transitive Alignments for Molecular Networking	176	78	98	44.3%
0722h3xn	An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus	175	59	116	33.7%
0m48f2xh	Proton Pump Inhibitor Usage and the Risk of Myocardial Infarction in the General Population	173	71	102	41.0%
28x5h3tn	A universal language for finding mass spectrometry data patterns	172	82	90	47.7%
46n9208p	Finding the optimal design of a passive microfluidic mixer	171	75	96	43.9%

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Note: Due to the evolving nature of web traffic, the data presented here should be considered approximate and subject to revision. Learn more.