Computer Science and Engineering Department Open Access Policy Deposits

eScholarship stats: History by Item for June through September, 2026

Item	Title	Total requests	2026-09	2026-08	2026-07	2026-06
8606f22r	On the Correctness of Metadata-Based SBOM Generation: A Differential Analysis Approach	440	128	122	99	91
6tx1g53v	Integrative analysis of multimodal mass spectrometry data in MZmine 3	398	100	102	88	108
7xh2w6pw	Feature-based molecular networking in the GNPS analysis environment	351	124	91	63	73
8q63m69f	Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking	299	64	64	67	104
9d4967pm	Drug target prediction through deep learning functional representation of gene signatures	295	53	78	75	89
7gs1w3pb	A chromosome conformation capture ordered sequence of the barley genome	277	65	74	46	92
86x0713x	Fine-tuned protein language model identifies antigen-specific B cell receptors from immune repertoires	245	59	53	48	85
7wn084zt	A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)	243	41	54	54	94
7b4425nr	Matrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One Hundred Million Barrier for Time Series Motifs and Joins	225	50	65	39	71
23p905b3	DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data	223	51	86	31	55
1dr6q4x6	Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica	221	52	49	56	64
08s0n0j5	Babesia duncani multi-omics identifies virulence factors and drug targets	212	28	30	60	94
0tt974fv	GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser	210	48	38	62	62
4gb5t10z	Probabilistic Path Prioritization for Hybrid Fuzzing	205	49	39	50	67
9tp855xw	Reverse metabolomics for the discovery of chemical structures from humans	202	47	76	39	40
31m0z7qf	Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation	194	48	68	29	49
4dv456qx	Author Correction: A universal language for finding mass spectrometry data patterns	175	72	23	14	66
2kx4r5g7	Somatic SF3B1 hotspot mutation in prolactinomas	164	22	93	26	23
6hg3w5rc	DNS Exfiltration Guided by Generative Adversarial Networks	162	42	33	36	51
4n64r36r	Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity	157	57	45	34	21
2bt8n2ss	ChemStor: Using Formal Methods To Guarantee Safe Storage and Disposal of Chemicals	151	20	90	22	19
2gd202bj	ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity	150	53	36	23	38
739415xm	Higher order divergence-free and curl-free interpolation on MAC grids	146	36	41	25	44
28x5h3tn	A universal language for finding mass spectrometry data patterns	145	47	52	16	30
6xg1852d	High-Level Language Tools for Reconfigurable Computing	144	29	46	36	33
3tv4530n	A mini-review of single-cell Hi-C embedding methods	142	29	53	14	46
79t6410z	Enhancing untargeted metabolomics using metadata-based source annotation	141	41	29	34	37
11z974mj	Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment	139	37	26	25	51
4xx8p7nh	Enabling pan-repository reanalysis for big data science of public metabolomics data	138	45	31	32	30
1s4297xt	TRFill: synergistic use of HiFi and Hi-C sequencing enables accurate assembly of tandem repeats for population-level analysis.	134	51	29	23	31
47c9p5cn	NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters	134	42	42	17	33
86n1p4qm	Impact of various high fat diets on gene expression and the microbiome across the mouse intestines	134	20	60	21	33
6qg0w6sw	SHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing	133	44	39	13	37
3jh0x2hh	Recent developments in microfluidic large scale integration	132	28	32	42	30
106675xj	SCALE method for single-cell ATAC-seq analysis via latent feature extraction	130	28	42	16	44
7j43n4qr	Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph	130	55	46	13	16
9006p69g	Skull-stripping with machine learning deformable organisms	130	63	32	8	27
5kt560ff	MSTmap Online: enhanced usability, visualization, and accessibility	127	37	40	31	19
1jn5p5sf	Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes	126	49	20	18	39
2hn3z2rg	Prediction of DNA Methylation With Long-Range State-Space Models	126	36	26	22	42
0rn2j1x1	ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization	125	40	24	24	37
6nh112gz	NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products	123	27	34	17	45
71k8c9hg	ENVnet provides a global molecular resource of dissolved organic matter	123	52	56	15
2nd2352b	TRFill: synergistic use of HiFi and Hi-C sequencing enables accurate assembly of tandem repeats for population-level analysis	122	39	20	17	46
4b35w89t	Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform	122	31	24	21	46
0q63c9z2	TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats	120	23	36	24	37
2cv9x5hn	RAmbler: de novo genome assembly of complex repetitive regions	120	30	31	14	45
79m5n368	ReDU: a framework to find and reanalyze public mass spectrometry data	119	42	37	16	24
4mx9j6pd	MOPSA: A microfluidics-optimized particle simulation algorithm	118	32	36	18	32
02z063sp	A Mid‐Density Single‐Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)	117	20	24	25	48

Top

Note: Due to the evolving nature of web traffic, the data presented here should be considered approximate and subject to revision. Learn more.