Computer Science and Engineering Department Open Access Policy Deposits

eScholarship stats: History by Item for May through August, 2026

Item	Title	Total requests	2026-08	2026-07	2026-06	2026-05
6tx1g53v	Integrative analysis of multimodal mass spectrometry data in MZmine 3	429	102	88	108	131
8606f22r	On the Correctness of Metadata-Based SBOM Generation: A Differential Analysis Approach	377	122	99	91	65
8q63m69f	Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking	364	64	67	104	129
7xh2w6pw	Feature-based molecular networking in the GNPS analysis environment	330	91	63	73	103
7gs1w3pb	A chromosome conformation capture ordered sequence of the barley genome	324	74	46	92	112
23p905b3	DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data	323	86	31	55	151
9d4967pm	Drug target prediction through deep learning functional representation of gene signatures	316	78	75	89	74
7wn084zt	A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)	312	54	54	94	110
08s0n0j5	Babesia duncani multi-omics identifies virulence factors and drug targets	281	30	60	94	97
86x0713x	Fine-tuned protein language model identifies antigen-specific B cell receptors from immune repertoires	281	53	48	85	95
1dr6q4x6	Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica	268	49	56	64	99
4gb5t10z	Probabilistic Path Prioritization for Hybrid Fuzzing	249	39	50	67	93
7b4425nr	Matrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One Hundred Million Barrier for Time Series Motifs and Joins	235	65	39	71	60
69w275j2	How to build better memory training games	233	47	20	32	134
31m0z7qf	Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation	227	68	29	49	81
0tt974fv	GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser	211	38	62	62	49
93k4j92j	On the prediction of non-CG DNA methylation using machine learning	206	20	16	56	114
9tp855xw	Reverse metabolomics for the discovery of chemical structures from humans	202	76	39	40	47
6hg3w5rc	DNS Exfiltration Guided by Generative Adversarial Networks	198	33	36	51	78
2hn3z2rg	Prediction of DNA Methylation With Long-Range State-Space Models	193	26	22	42	103
1sj3d7f5	<i>Babesia hegotelforum</i> sp. nov., a zoonotic <i>Babesia</i> species previously referred to as <i>Babesia sp</i>. <i>MO1</i>.	188	33	11	34	110
2bt8n2ss	ChemStor: Using Formal Methods To Guarantee Safe Storage and Disposal of Chemicals	184	90	22	19	53
2kx4r5g7	Somatic SF3B1 hotspot mutation in prolactinomas	180	93	26	23	38
739415xm	Higher order divergence-free and curl-free interpolation on MAC grids	177	41	25	44	67
6xg1852d	High-Level Language Tools for Reconfigurable Computing	175	46	36	33	60
79t6410z	Enhancing untargeted metabolomics using metadata-based source annotation	175	29	34	37	75
02z063sp	A Mid‐Density Single‐Nucleotide Polymorphism Panel for Molecular Applications in Cowpea (Vigna unguiculata (L.) Walp)	169	24	25	48	72
2gd202bj	ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity	168	36	23	38	71
3jh0x2hh	Recent developments in microfluidic large scale integration	164	32	42	30	60
86n1p4qm	Impact of various high fat diets on gene expression and the microbiome across the mouse intestines	164	60	21	33	50
0qj532xn	Comparative structural analysis of protein complexes with SPICE.	163	32	25	37	69
3tv4530n	A mini-review of single-cell Hi-C embedding methods	162	53	14	46	49
6qg0w6sw	SHICEDO: single-cell Hi-C data enhancement with reduced over-smoothing	162	39	13	37	73
6nh112gz	NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products	161	34	17	45	65
4dv456qx	Author Correction: A universal language for finding mass spectrometry data patterns	160	23	14	66	57
0080h493	Leveraging off higher plant phylogenetic insights for antiplasmodial drug discovery	152	27	26	31	68
4n64r36r	Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity	151	45	34	21	51
11z974mj	Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment	150	26	25	51	48
28x5h3tn	A universal language for finding mass spectrometry data patterns	150	52	16	30	52
5nq8r43t	Towards optimal selection of ultra-deep sequencing reads for de novo genome assembly	149	12	26	31	80
0q63c9z2	TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats	148	36	24	37	51
4b35w89t	Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform	147	24	21	46	56
8xc8s9df	Exploiting a novel algorithm and GPUs to break the ten quadrillion pairwise comparisons barrier for time series motifs and joins	146	33	15	37	61
0282t6n7	H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids	145	33	26	23	63
0z839098	Comprehensive Memory Safety Validation: An Alternative Approach to Memory Safety	145	37	17	29	62
2vb1s2kb	Lightweight Coordinated Sampling for Dynamic Flows under Budget Constraints	145	42	19	24	60
4mx9j6pd	MOPSA: A microfluidics-optimized particle simulation algorithm	144	36	18	32	58
31t6m7w8	Using printer ink color to control the behavior of paper microfluidics	143	24	21	25	73
1jn5p5sf	Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes	140	20	18	39	63
4xx8p7nh	Enabling pan-repository reanalysis for big data science of public metabolomics data	140	31	32	30	47

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