Environ Genomics & Systems Bio

eScholarship stats: History by Item for July through October, 2026

Item	Title	Total requests	2026-10	2026-09	2026-08	2026-07
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	1,468	459	333	400	276
9315g04c	The Artificial Intelligence Ontology: LLM-Assisted Construction of AI Concept Hierarchies	836	140	290	311	95
7956s6h6	The Human Phenotype Ontology in 2024: phenotypes around the world	815	206	247	246	116
69z6h6mx	Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?	653	261	129	151	112
2mq4z3j6	Complete biosynthesis of QS-21 in engineered yeast	610	163	118	192	137
53j5t3m7	Phage therapy: From biological mechanisms to future directions	595	224	165	125	81
9v80x6j2	Reduction of microbial diversity in grassland soil is driven by long-term climate warming	568	238	86	104	140
2z5184j0	Comparing in planta accumulation with microbial routes to set targets for a cost-competitive bioeconomy	567	496	22	36	13
5rg2z05p	Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough	564	179	81	223	81
701467hb	The Gene Ontology resource: enriching a GOld mine	510	212	107	86	105
8sr171mx	Synthetic Scientific Image Generation with VAE, GAN, and Diffusion Model Architectures	495	119	144	149	83
0636v49k	Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability	489	199	83	87	120
0xk6c2hf	Structures of a phycobilisome in light-harvesting and photoprotected states	480	160	83	102	135
7nz7540v	The complete sequence of human chromosome 5	473	120	108	214	31
8zg6p5jr	The Human Phenotype Ontology in 2021	466	189	60	123	94
20v234dt	The Gene Ontology knowledgebase in 2026	459	118	113	145	83
5pj2g46p	Methyl-Based Methanogenesis: an Ecological and Genomic Review	454	191	109	73	81
01j548f4	Perspectives on ENCODE	442	136	109	67	130
9qm4q4zm	A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)	431	162	87	75	107
3wd3p1tm	Learning representations of microbe–metabolite interactions	419	174	77	87	81
5v36v5j6	Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea	419	170	95	78	76
4233t8j8	Cooking shapes the structure and function of the gut microbiome	410	161	84	95	70
23x7d9r0	Environmental genomics reveals a single species ecosystem deep within the Earth	402	155	74	109	64
0ck9n78k	Germline Chd8 haploinsufficiency alters brain development in mouse	396	168	53	81	94
92k2p88m	An open source knowledge graph ecosystem for the life sciences	395	182	52	87	74
2nt21413	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria	393	174	63	68	88
6hn3v1t6	GA4GH: International policies and standards for data sharing across genomic research and healthcare	383	68	116	166	33
4mc6x82c	RNAcentral 2021: secondary structure integration, improved sequence search and new member databases	382	153	63	86	80
7hk0577t	Environmental stress mediates groundwater microbial community assembly	372	116	73	83	100
3w19w2dh	KG-Hub—building and exchanging biological knowledge graphs	370	144	86	82	58
0cf9v4c4	Increased enhancer–promoter interactions during developmental enhancer activation in mammals	369	75	87	114	93
7c96t04w	Mutant phenotypes for thousands of bacterial genes of unknown function	369	136	76	67	90
3101x2rn	The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)	365	90	80	125	70
1ct062cx	Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing	363	165	58	67	73
2x09q87j	Author Correction: Perspectives on ENCODE	362	194	59	36	73
8cv8h6f2	A Suite of Constitutive Promoters for Tuning Gene Expression in Plants	360	156	55	67	82
8zv742pc	Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages	360	146	80	62	72
2c40w6hv	A compendium of human gene functions derived from evolutionary modelling	353	113	66	73	101
3qf33012	Binary vector copy number engineering improves Agrobacterium-mediated transformation	351	93	73	97	88
7hc8b5xx	IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes	351	143	75	50	83
1pc0z4nx	Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits	344	182	50	48	64
6p94q2rz	A roadmap for the functional annotation of protein families: a community perspective	342	149	65	54	74
8bt5g4s4	A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)	342	170	59	49	64
62c6b93v	Ultraconserved enhancer function does not require perfect sequence conservation	341	148	71	56	66
8xx9b11g	Harmonizing model organism data in the Alliance of Genome Resources	341	168	48	46	79
76f427fs	Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies	339	157	56	52	74
2310v0bv	Vision, challenges and opportunities for a Plant Cell Atlas	338	164	78	31	65
1b67303r	Auto-inducible synthetic pathway in E. coli enhanced sustainable indigo production from glucose	333	82	66	111	74
13j4f1fx	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes	332	139	72	49	72
2ch788zm	WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans	332	143	65	46	78

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