Environ Genomics & Systems Bio

eScholarship stats: History by Item for May through August, 2026

Item	Title	Total requests	2026-08	2026-07	2026-06	2026-05
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	1,291	400	276	317	298
9315g04c	The Artificial Intelligence Ontology: LLM-Assisted Construction of AI Concept Hierarchies	652	311	95	120	126
69z6h6mx	Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?	622	151	112	186	173
9v80x6j2	Reduction of microbial diversity in grassland soil is driven by long-term climate warming	603	104	140	167	192
7956s6h6	The Human Phenotype Ontology in 2024: phenotypes around the world	597	246	116	121	114
0xk6c2hf	Structures of a phycobilisome in light-harvesting and photoprotected states	596	102	135	153	206
2mq4z3j6	Complete biosynthesis of QS-21 in engineered yeast	589	192	137	129	131
8sr171mx	Synthetic Scientific Image Generation with VAE, GAN, and Diffusion Model Architectures	564	149	83	173	159
5rg2z05p	Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough	475	223	81	99	72
53j5t3m7	Phage therapy: From biological mechanisms to future directions	461	125	81	141	114
3qf33012	Binary vector copy number engineering improves Agrobacterium-mediated transformation	453	97	88	134	134
0636v49k	Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability	437	87	120	131	99
7hk0577t	Environmental stress mediates groundwater microbial community assembly	430	83	100	109	138
9qm4q4zm	A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)	414	75	107	116	116
20v234dt	The Gene Ontology knowledgebase in 2026	400	145	83	76	96
2c40w6hv	A compendium of human gene functions derived from evolutionary modelling	400	73	101	132	94
8zg6p5jr	The Human Phenotype Ontology in 2021	399	123	94	91	91
51c8p1tp	Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions	395	82	64	116	133
2nt21413	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria	388	68	88	91	141
701467hb	The Gene Ontology resource: enriching a GOld mine	388	86	105	91	106
3wd3p1tm	Learning representations of microbe–metabolite interactions	380	87	81	105	107
8cv8h6f2	A Suite of Constitutive Promoters for Tuning Gene Expression in Plants	378	67	82	109	120
0zs4n252	Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan	375	52	70	101	152
8q63m69f	Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking	364	64	67	104	129
8zv742pc	Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages	360	62	72	94	132
2ms9t9qn	The sequence and analysis of duplication rich human chromosome 16	359	232	44	39	44
4391h0zc	Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution	357	57	79	88	133
5c25c8j1	Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing	355	85	67	77	126
23x7d9r0	Environmental genomics reveals a single species ecosystem deep within the Earth	351	109	64	84	94
6hn3v1t6	GA4GH: International policies and standards for data sharing across genomic research and healthcare	351	166	33	72	80
7c96t04w	Mutant phenotypes for thousands of bacterial genes of unknown function	339	67	90	88	94
01j548f4	Perspectives on ENCODE	335	67	130	52	86
6nn6p8db	Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis	335	106	65	92	72
4sr1g8sv	Dynamic enhancer landscapes in human craniofacial development	330	55	56	90	129
05p6h8j3	Community standards and future opportunities for synthetic communities in plant–microbiota research	328	109	53	54	112
7bd0j5b0	Comparative metagenomics of microbial communities	327	118	115	16	78
3101x2rn	The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)	326	125	70	63	68
7hc8b5xx	IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes	326	50	83	92	101
1ct062cx	Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing	323	67	73	92	91
0ck9n78k	Germline Chd8 haploinsufficiency alters brain development in mouse	322	81	94	65	82
0mg64040	Combinatorial transcription factor binding encodes cis-regulatory wiring of mouse forebrain GABAergic neurogenesis	320	77	96	89	58
3q12x1gh	Perspectives for self-driving labs in synthetic biology	319	75	39	82	123
5pj2g46p	Methyl-Based Methanogenesis: an Ecological and Genomic Review	318	73	81	83	81
92k2p88m	An open source knowledge graph ecosystem for the life sciences	318	87	74	89	68
2j30j157	A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming	313	74	37	115	87
3z44x6vv	Enhancer redundancy provides phenotypic robustness in mammalian development	311	53	55	84	119
3n990795	JBrowse: a dynamic web platform for genome visualization and analysis	310	91	59	76	84
6p94q2rz	A roadmap for the functional annotation of protein families: a community perspective	309	54	74	83	98
42k112z2	A genomic catalog of Earth’s microbiomes	308	81	53	85	89
1f868195	Consistent performance of large language models in rare disease diagnosis across ten languages and 4917 cases	307	116	48	87	56

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