Closely related, ecologically similar species often roost in distinctly different habitats, and roosting patterns also vary within species in relation to sex, age and season. The causes of such variation are not well understood at either a proximate or ultimate level. We studied communal roosting in two congeneric species of Prionostemma harvestmen at a rainforest site in Nicaragua. Previous research showed that Prionostemma sp. 1 forms male-biased communal roosts in tree-root cavities, while Prionostemma sp. 2 forms communal roosts of variable but temporally stable sex ratios on spiny palms. Here, we investigate potential mechanisms underlying variation in roosting site choice between and within these syntopic species. First, we present the results of a field experiment designed to probe the mechanism underlying skewed roost sex ratios in Prionostemma sp. 2. Previous studies have suggested that these harvestmen use conspecific scent to locate communal roosts and that new roosts can be established via group translocation. Therefore, to test the hypothesis that skewed roost sex ratios in this species arise from sex differences in scent marks, we translocated single-sex groups of ca. 30 individuals to each of 20 previously unoccupied spiny palms. Female release sites attracted new recruits of both sexes, while male release sites attracted almost exclusively males. We infer that Prionostemma sp. 2 females preferentially roost in sites scent-marked by females and that this mechanism is sufficient to explain the skewed roost ratios. Further adding to knowledge of Prionostemma roosting behavior, we show that Prionostemma sp. 1 forms female-biased communal roosts on spiny palms, that some roosts contain both species, and that the species composition is stable on a time scale of at least 2 weeks. To the best of our knowledge, this study is the first experimental test of mechanisms underlying sexual segregation at communal roosts in any taxon.