Black-tailed prairie dogs are considered an important “keystone” species of the prairies, on one hand, and a nuisance rodent causing considerable damage on the other. To effectively manage prairie dog colonies, a better understanding is needed of the effects of management practices on prairie dogs, their burrow systems, and other species that may use those burrow systems. For example, when fumigants are used to control prairie dog populations, to what extent may other species be affected? We used a burrow-probe camera system to observe animal use of 777 burrow openings. These included colonies both in urban/suburban and natural prairie settings as well as active versus inactive colonies. Burrows were usually probed to a depth of about 2 m, requiring only a few minutes each. Relatively few animals were seen and most were invertebrates. More animals were observed in urban/suburban burrow systems versus prairie burrow systems. Somewhat more animals were observed in active versus abandoned burrow systems. The vertebrates observed were prairie dogs, rabbits, ground squirrels, snakes, a mouse, and a salamander. The implications and possible short-comings of this study are discussed.

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2-8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of this accelerated evolutionary rate remains to be seen as no critical phenotypic changes were observed in our animal models using white-tailed deer origin viruses. Still, SARS-CoV-2 has transmitted in white-tailed deer populations for a relatively short duration, and the risk of future changes may have serious consequences for humans and livestock.