Roof rats (Rattus rattus) are an invasive rodent that can cause substantial damage in citrus orchards. Their populations appear to be expanding throughout California, yet little is known about efficacious, cost-effective strategies to manage this invasive pest while minimizing pesticide use. Therefore, we developed two Integrated Pest Management (IPM) programs based on results of recent studies that incorporated observations of roof rat movement patterns, compared monitoring tools, and tested trapping and baiting options. Both IPM programs utilized elevated bait stations containing 0.005% diphacinone-treated oats and trapping, and we compared those programs to a bait-station only approach to determine which strategies were most practical. Initial IPM plots included a combination of elevated bait stations followed by a brief snap-trapping program and a longer-duration trapping program with Goodnature® A24 traps to hopefully keep rat numbers at low levels (Trial 1). Although initial bait applications were effective at reducing rat numbers, populations quickly rebounded within both the bait station only and IPM treatment areas within two-months following the completion of the baiting programs. Additionally, costs for this initial IPM approach were almost five times as much as a bait station approach. Our second IPM strategy (Trial 2) again incorporated an initial bait application period to knock down roof rat populations, followed by the use of trapping tunnels that contained two snap traps to further reduce/maintain rat numbers longer-term. We again observed effective knockdown with bait applications. However, in contrast to Trial 1, we observed substantial success with trapping tunnels at maintaining, and even increasing, overall efficacy within IPM plots, and IPM plots were always more efficacious than bait station only plots. Although the bait station only approach was less costly than the IPM approach used in Trial 2, the cost disparity was substantially less than that for Trial 1, and the cost difference disappeared during subsequent years, indicating long-term cost-effectiveness of this IPM approach. Collectively, the relatively low cost and high efficacy of a management program that incorporates initial bait applications to knock down roof rat populations, followed by a long-term snap-trapping program to maintain low densities, should provide an effective strategy for managing roof rats in citrus orchards.