Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study
- Gottlieb, DJ;
- Hek, K;
- Chen, T-H;
- Watson, NF;
- Eiriksdottir, G;
- Byrne, EM;
- Cornelis, M;
- Warby, SC;
- Bandinelli, S;
- Cherkas, L;
- Evans, DS;
- Grabe, HJ;
- Lahti, J;
- Li, M;
- Lehtimäki, T;
- Lumley, T;
- Marciante, KD;
- Pérusse, L;
- Psaty, BM;
- Robbins, J;
- Tranah, GJ;
- Vink, JM;
- Wilk, JB;
- Stafford, JM;
- Bellis, C;
- Biffar, R;
- Bouchard, C;
- Cade, B;
- Curhan, GC;
- Eriksson, JG;
- Ewert, R;
- Ferrucci, L;
- Fülöp, T;
- Gehrman, PR;
- Goodloe, R;
- Harris, TB;
- Heath, AC;
- Hernandez, D;
- Hofman, A;
- Hottenga, J-J;
- Hunter, DJ;
- Jensen, MK;
- Johnson, AD;
- Kähönen, M;
- Kao, L;
- Kraft, P;
- Larkin, EK;
- Lauderdale, DS;
- Luik, AI;
- Medici, M;
- Montgomery, GW;
- Palotie, A;
- Patel, SR;
- Pistis, G;
- Porcu, E;
- Quaye, L;
- Raitakari, O;
- Redline, S;
- Rimm, EB;
- Rotter, JI;
- Smith, AV;
- Spector, TD;
- Teumer, A;
- Uitterlinden, AG;
- Vohl, M-C;
- Widen, E;
- Willemsen, G;
- Young, T;
- Zhang, X;
- Liu, Y;
- Blangero, J;
- Boomsma, DI;
- Gudnason, V;
- Hu, F;
- Mangino, M;
- Martin, NG;
- O'Connor, GT;
- Stone, KL;
- Tanaka, T;
- Viikari, J;
- Gharib, SA;
- Punjabi, NM;
- Räikkönen, K;
- Völzke, H;
- Mignot, E;
- Tiemeier, H
- et al.
Published Web Location
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4430294/Abstract
Usual sleep duration is a heritable trait correlated with psychiatric morbidity, cardiometabolic disease and mortality, although little is known about the genetic variants influencing this trait. A genome-wide association study (GWAS) of usual sleep duration was conducted using 18 population-based cohorts totaling 47 180 individuals of European ancestry. Genome-wide significant association was identified at two loci. The strongest is located on chromosome 2, in an intergenic region 35- to 80-kb upstream from the thyroid-specific transcription factor PAX8 (lowest P=1.1 × 10(-9)). This finding was replicated in an African-American sample of 4771 individuals (lowest P=9.3 × 10(-4)). The strongest combined association was at rs1823125 (P=1.5 × 10(-10), minor allele frequency 0.26 in the discovery sample, 0.12 in the replication sample), with each copy of the minor allele associated with a sleep duration 3.1 min longer per night. The alleles associated with longer sleep duration were associated in previous GWAS with a more favorable metabolic profile and a lower risk of attention deficit hyperactivity disorder. Understanding the mechanisms underlying these associations may help elucidate biological mechanisms influencing sleep duration and its association with psychiatric, metabolic and cardiovascular disease.
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