Joint Genome Institute

eScholarship stats: History by Item for May through August, 2026

Item	Title	Total requests	2026-08	2026-07	2026-06	2026-05
1h3515gn	BBMap: A Fast, Accurate, Splice-Aware Aligner	1,345	371	281	383	310
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	1,291	400	276	317	298
28w1d3zs	A Korarchael Genome Reveals Insights into the Evolution of the Archaea	1,174	86	898	79	111
6rg9n14p	A unified catalog of 204,938 reference genomes from the human gut microbiome	757	341	102	169	145
7vn8q02v	Persistence and plasticity in bacterial gene regulation	716	146	173	181	216
5fw223fd	Microbial secondary metabolites: advancements to accelerate discovery towards application	711	196	153	172	190
96n6w63s	Identification of mobile genetic elements with geNomad	663	110	130	214	209
12v5v27c	A call for caution in the biological interpretation of viral auxiliary metabolic genes	626	218	108	175	125
4zh090xt	Uncovering Earth’s virome	592	158	109	142	183
6x297461	A global metagenomic map of urban microbiomes and antimicrobial resistance	592	111	142	171	168
5wk090j4	A genomic perspective on fungal diversity and evolution	575	197	97	84	197
3k8311t2	Mapping genome-wide transcription-factor binding sites using DAP-seq	547	217	73	106	151
8pw2x188	Ancient gene linkages support ctenophores as sister to other animals	539	71	57	83	328
0cf9v4c4	Increased enhancer–promoter interactions during developmental enhancer activation in mammals	501	114	93	118	176
61w6w086	Introduction to Computational Metagenomics	500	109	101	125	165
0126f84t	Structure, function and diversity of the healthy human microbiome	481	219	77	90	95
44v0c3r5	Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution	468	161	131	59	117
8rk2x6pj	A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome	442	95	99	110	138
2hg7004n	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification	437	66	109	95	167
0h38397x	High fat intake sustains sorbitol intolerance after antibiotic-mediated Clostridia depletion from the gut microbiota	435	154	81	97	103
4p25j4tm	Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts	429	84	97	126	122
5gw9r34k	The genome sequence of segmental allotetraploid peanut Arachis hypogaea	420	70	87	125	138
03b2f02f	Viromics approaches for the study of viral diversity and ecology in microbiomes	411	138	102	68	103
6n06r0hp	IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata	409	153	71	81	104
81w457th	XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent	398	79	62	118	139
2nt21413	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria	388	68	88	91	141
43x013sh	Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus	379	9	6	28	336
8d88b106	Recruitment, rewiring and deep conservation in flowering plant gene regulation	370	111	106	80	73
5xr3w8d5	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria	365	63	56	102	144
1h51x8jw	The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools	359	193	89	32	45
2ms9t9qn	The sequence and analysis of duplication rich human chromosome 16	359	232	44	39	44
4391h0zc	Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution	357	57	79	88	133
5c25c8j1	Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing	355	85	67	77	126
0jj595tn	Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining	352	115	44	37	156
41r662pm	Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem	351	53	84	100	114
1r25188f	Fungal Transcriptomics	350	99	106	56	89
8dh7k2k4	The complex polyploid genome architecture of sugarcane	349	56	59	91	143
61k340hk	Comparative genomics of citric-acid producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88	347	187	29	44	87
3g2101xs	A predicted CRISPR-mediated symbiosis between uncultivated archaea	343	82	55	93	113
7c96t04w	Mutant phenotypes for thousands of bacterial genes of unknown function	339	67	90	88	94
64r0m71b	Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture	336	105	65	82	84
01j548f4	Perspectives on ENCODE	335	67	130	52	86
6nn6p8db	Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis	335	106	65	92	72
75w5v2gm	An expanded registry of candidate cis-regulatory elements	332	78	86	86	82
4sr1g8sv	Dynamic enhancer landscapes in human craniofacial development	330	55	56	90	129
1dc93220	Gain-of-function SOS1 mutations cause a distinctive form of noonan syndrome	328	102	61	99	66
7bd0j5b0	Comparative metagenomics of microbial communities	327	118	115	16	78
0wp465kn	MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies	326	81	54	123	68
3101x2rn	The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)	326	125	70	63	68
7hc8b5xx	IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes	326	50	83	92	101

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