Joint Genome Institute

eScholarship stats: History by Item for June through September, 2026

Item	Title	Total requests	2026-09	2026-08	2026-07	2026-06
1h3515gn	BBMap: A Fast, Accurate, Splice-Aware Aligner	1,386	351	371	281	383
57f5059w	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly	1,326	333	400	276	317
28w1d3zs	A Korarchael Genome Reveals Insights into the Evolution of the Archaea	1,088	25	86	898	79
6rg9n14p	A unified catalog of 204,938 reference genomes from the human gut microbiome	705	93	341	102	169
5fw223fd	Microbial secondary metabolites: advancements to accelerate discovery towards application	691	170	196	153	172
12v5v27c	A call for caution in the biological interpretation of viral auxiliary metabolic genes	638	137	218	108	175
0126f84t	Structure, function and diversity of the healthy human microbiome	618	232	219	77	90
7vn8q02v	Persistence and plasticity in bacterial gene regulation	586	86	146	173	181
3k8311t2	Mapping genome-wide transcription-factor binding sites using DAP-seq	574	178	217	73	106
5wk090j4	A genomic perspective on fungal diversity and evolution	563	185	197	97	84
96n6w63s	Identification of mobile genetic elements with geNomad	543	89	110	130	214
4zh090xt	Uncovering Earth’s virome	519	110	158	109	142
6x297461	A global metagenomic map of urban microbiomes and antimicrobial resistance	519	95	111	142	171
0h38397x	High fat intake sustains sorbitol intolerance after antibiotic-mediated Clostridia depletion from the gut microbiota	471	139	154	81	97
44v0c3r5	Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution	441	90	161	131	59
0cf9v4c4	Increased enhancer–promoter interactions during developmental enhancer activation in mammals	412	87	114	93	118
6n06r0hp	IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata	404	99	153	71	81
03b2f02f	Viromics approaches for the study of viral diversity and ecology in microbiomes	393	85	138	102	68
4p25j4tm	Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts	389	82	84	97	126
8d88b106	Recruitment, rewiring and deep conservation in flowering plant gene regulation	383	86	111	106	80
81w457th	XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent	379	120	79	62	118
5gw9r34k	The genome sequence of segmental allotetraploid peanut Arachis hypogaea	374	92	70	87	125
61w6w086	Introduction to Computational Metagenomics	373	38	109	101	125
8rk2x6pj	A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome	368	64	95	99	110
8pw2x188	Ancient gene linkages support ctenophores as sister to other animals	360	149	71	57	83
01j548f4	Perspectives on ENCODE	358	109	67	130	52
1r25188f	Fungal Transcriptomics	344	83	99	106	56
1h51x8jw	The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools	340	26	193	89	32
3101x2rn	The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)	338	80	125	70	63
2ms9t9qn	The sequence and analysis of duplication rich human chromosome 16	334	19	232	44	39
2jx454ms	Neurospora intermedia from a traditional fermented food enables waste-to-food conversion	331	93	74	75	89
0gz547cp	Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota	330	137	94	48	51
64r0m71b	Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture	324	72	105	65	82
0wp465kn	MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies	323	65	81	54	123
7c96t04w	Mutant phenotypes for thousands of bacterial genes of unknown function	321	76	67	90	88
3g2101xs	A predicted CRISPR-mediated symbiosis between uncultivated archaea	320	90	82	55	93
6nn6p8db	Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis	319	56	106	65	92
4233t8j8	Cooking shapes the structure and function of the gut microbiome	313	84	95	70	64
2nt21413	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria	310	63	68	88	91
41r662pm	Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem	309	72	53	84	100
61k340hk	Comparative genomics of citric-acid producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88	308	48	187	29	44
5v36v5j6	Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea	307	95	78	76	58
2hg7004n	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification	306	36	66	109	95
16d2k5kn	Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)	303	78	97	69	59
1dc93220	Gain-of-function SOS1 mutations cause a distinctive form of noonan syndrome	303	41	102	61	99
2mf8055w	The IMG/M data management and analysis system v.7: content updates and new features	301	77	95	72	57
0b47p8m1	Stressing the importance of plant specialized metabolites: omics-based approaches for discovering specialized metabolism in plant stress responses	300	81	104	54	61
7hc8b5xx	IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes	300	75	50	83	92
42k112z2	A genomic catalog of Earth’s microbiomes	298	79	81	53	85
75w5v2gm	An expanded registry of candidate cis-regulatory elements	296	46	78	86	86

Top

Note: Due to the evolving nature of web traffic, the data presented here should be considered approximate and subject to revision. Learn more.