- Beltrán, Jesús;
- Steiner, Paul J;
- Bedewitz, Matthew;
- Wei, Shuang;
- Peterson, Francis C;
- Li, Zongbo;
- Hughes, Brigid E;
- Hartley, Zachary;
- Robertson, Nicholas R;
- Medina-Cucurella, Angélica V;
- Baumer, Zachary T;
- Leonard, Alison C;
- Park, Sang-Youl;
- Volkman, Brian F;
- Nusinow, Dmitri A;
- Zhong, Wenwan;
- Wheeldon, Ian;
- Cutler, Sean R;
- Whitehead, Timothy A
A general method to generate biosensors for user-defined molecules could provide detection tools for a wide range of biological applications. Here, we describe an approach for the rapid engineering of biosensors using PYR1 (Pyrabactin Resistance 1), a plant abscisic acid (ABA) receptor with a malleable ligand-binding pocket and a requirement for ligand-induced heterodimerization, which facilitates the construction of sense-response functions. We applied this platform to evolve 21 sensors with nanomolar to micromolar sensitivities for a range of small molecules, including structurally diverse natural and synthetic cannabinoids and several organophosphates. X-ray crystallography analysis revealed the mechanistic basis for new ligand recognition by an evolved cannabinoid receptor. We demonstrate that PYR1-derived receptors are readily ported to various ligand-responsive outputs, including enzyme-linked immunosorbent assay (ELISA)-like assays, luminescence by protein-fragment complementation and transcriptional circuits, all with picomolar to nanomolar sensitivity. PYR1 provides a scaffold for rapidly evolving new biosensors for diverse sense-response applications.