Bacteria occupy nearly every environmental niche on Earth, including extremities ofsalinity, temperature, pressure, and pH (1). In each of these settings, they share space and
resources with other organisms and form a variety of symbiotic relationships (2). In some cases,
bacteria have evolved to deliver toxic effectors into the environment (3), or directly into nearby
organisms (4,5) to provide themselves with a growth advantage over their neighbors. A number
of secretion systems have been identified which allow bacteria to translocate effectors across
their membranes, as well as the membranes of targeted organisms (6). In Gram-negative bacteria,
contact-dependent Type Vb secretion systems (T5SS) recognize specific surface epitopes on
neighboring bacteria and deliver toxic proteins into their cytosol (7–9). Sibling cells are protected
from intoxication by expression of an immunity protein which binds and inactivates cognate
toxic effectors (10,11). This process, termed contact-dependent growth inhibition (CDI) is
associated with kin recognition (8,12), genetic stability (13), biofilm formation (14,15) and
pathogenesis (16). The secretory pathway of CDI systems across the membranes of toxinproducing cells appears highly conserved (17). However, the mechanisms underlying target cell recognition, traversal across target cell membranes, as well as the processes by which toxins exhibit their toxicity, are highly variable and in some cases not well understood (8,11,18,19).
In chapter 1, I review the arsenal of systems used by Gram-negative bacteria to translocate
proteins across their membranes, with special focus on Type Vb CDI systems. In chapter 2, I
identify novel inner membrane proteins co-opted by the cytoplasm-entry domains of CDI
systems. Additionally, I find that some unique entry domains the recognize same inner
membrane proteins, suggesting differences in recognized epitopes. In chapters 3 and 4, I
investigate potential growth inhibition mechanisms of two protein effectors found in CDI
systems from Enterobacter cloacae. First, I cover an effector domain from E. cloacae S611
with homology to SAM-binding domains and propose that it could act as a toxic
methyltransferase. Then, I investigate an effector domain from E. cloacae UCI49 with
predicted homology to glutaminases and cysteine proteases, where I identify potential protein
targets via mass spectrometry. Finally, in chapter 5 I discuss potential future directions in the
field of CDI.