- Mazzoni, Esteban O;
- Mahony, Shaun;
- Iacovino, Michelina;
- Morrison, Carolyn A;
- Mountoufaris, George;
- Closser, Michael;
- Whyte, Warren A;
- Young, Richard A;
- Kyba, Michael;
- Gifford, David K;
- Wichterle, Hynek
The study of developmentally regulated transcription factors by chromatin immunoprecipitation and deep sequencing (ChIP-seq) faces two major obstacles: availability of ChIP-grade antibodies and access to sufficient number of cells. We describe versatile genome-wide analysis of transcription-factor binding sites by combining directed differentiation of embryonic stem cells and inducible expression of tagged proteins. We demonstrate its utility by mapping DNA-binding sites of transcription factors involved in motor neuron specification.