- Jaumdally, S;
- Tomasicchio, M;
- Pooran, A;
- Esmail, A;
- Kotze, A;
- Meier, S;
- Wilson, L;
- Oelofse, S;
- van der Merwe, C;
- Roomaney, A;
- Davids, M;
- Suliman, T;
- Joseph, R;
- Perumal, T;
- Scott, A;
- Shaw, M;
- Preiser, W;
- Williamson, C;
- Goga, A;
- Mayne, E;
- Gray, G;
- Moore, P;
- Sigal, A;
- Metcalfe, J;
- Dheda, K;
- Limberis, Jason
Airborne transmission of SARS-CoV-2 aerosol remains contentious. Importantly, whether cough or breath-generated bioaerosols can harbor viable and replicating virus remains largely unclarified. We performed size-fractionated aerosol sampling (Andersen cascade impactor) and evaluated viral culturability in human cell lines (infectiousness), viral genetics, and host immunity in ambulatory participants with COVID-19. Sixty-one percent (27/44) and 50% (22/44) of participants emitted variant-specific culture-positive aerosols <10μm and <5μm, respectively, for up to 9 days after symptom onset. Aerosol culturability is significantly associated with lower neutralizing antibody titers, and suppression of transcriptomic pathways related to innate immunity and the humoral response. A nasopharyngeal Ct <17 rules-in ~40% of aerosol culture-positives and identifies those who are probably highly infectious. A parsimonious three transcript blood-based biosignature is highly predictive of infectious aerosol generation (PPV > 95%). There is considerable heterogeneity in potential infectiousness i.e., only 29% of participants were probably highly infectious (produced culture-positive aerosols <5μm at ~6 days after symptom onset). These data, which comprehensively confirm variant-specific culturable SARS-CoV-2 in aerosol, inform the targeting of transmission-related interventions and public health containment strategies emphasizing improved ventilation.