This thesis presents results from an experimental investigation of the macroscopic and microscopic atomization and combustion behavior of B99 biodiesel, ethanol, B99-ethanol blends, methanol, and an F-76-Algae biodiesel blend. In addition, conventional F-76 and Diesel #2 sprays were characterized as a base case to compare with. The physical properties and chemical composition of each fuel were measured in order to characterize and predict atomization performance. A variety of B99-ethanol fuel blends were used which demonstrate a tradeoff between lower density, surface tension, and viscosity with a decrease in the air to liquid ratio. A plain jet air-blast atomizer was used for both non-reacting and reacting tests. The flow rates for the alternative fuels were set by matching the power input provided by the baseline fossil fuels in order to simulate use as a drop in replacement. For this study, phase Doppler interferometry is employed to gain information on drop size, SMD, velocity, and volume flux distribution across the spray plume. A high speed camera is used to gather high speed cinematography of the sprays for observing breakup characteristics and providing additional insight. Reacting flow tests captured NOx, CO, and UHC emissions along with high speed footage used to predict soot levels based on flame luminosity. The results illustrate how the fuel type impacts the atomization and spray characteristics. The air-blast atomizer resulted in similar atomization performance among the DF2, F-76, and the F-76/Algae blend. While methanol and ethanol are not suitable candidates for this air-blast configuration and B99 produces significantly larger droplets, the addition of ethanol decreased drop sizes for all B99-ethanol blends by approximately 5 microns. In regards to reacting conditions, increased ethanol blending to B99 consistently lowered NOx emissions while decreasing combustion efficiency. Overall, lower NOx and CO emissions were achieved with the fuel blends than for conventional diesels, while the neat biofuels emitted overall less NOx per CO than the baseline fuels. This research clearly demonstrated that blends of two renewable fuels (B99 and ethanol improved (1) atomization and (2) emissions performance for the burner studied when compared to the baseline fossil fuels DF2 and F-76.