- Mak, Angel CY;
- White, Marquitta J;
- Eckalbar, Walter L;
- Szpiech, Zachary A;
- Oh, Sam S;
- Pino-Yanes, Maria;
- Hu, Donglei;
- Goddard, Pagé;
- Huntsman, Scott;
- Galanter, Joshua;
- Wu, Ann Chen;
- Himes, Blanca E;
- Germer, Soren;
- Vogel, Julia M;
- Bunting, Karen L;
- Eng, Celeste;
- Salazar, Sandra;
- Keys, Kevin L;
- Liberto, Jennifer;
- Nuckton, Thomas J;
- Nguyen, Thomas A;
- Torgerson, Dara G;
- Kwok, Pui-Yan;
- Levin, Albert M;
- Celedón, Juan C;
- Forno, Erick;
- Hakonarson, Hakon;
- Sleiman, Patrick M;
- Dahlin, Amber;
- Tantisira, Kelan G;
- Weiss, Scott T;
- Serebrisky, Denise;
- Brigino-Buenaventura, Emerita;
- Farber, Harold J;
- Meade, Kelley;
- Lenoir, Michael A;
- Avila, Pedro C;
- Sen, Saunak;
- Thyne, Shannon M;
- Rodriguez-Cintron, William;
- Winkler, Cheryl A;
- Moreno-Estrada, Andrés;
- Sandoval, Karla;
- Rodriguez-Santana, Jose R;
- Kumar, Rajesh;
- Williams, L Keoki;
- Ahituv, Nadav;
- Ziv, Elad;
- Seibold, Max A;
- Darnell, Robert B;
- Zaitlen, Noah;
- Hernandez, Ryan D;
- Burchard, Esteban G
Rationale
Albuterol, a bronchodilator medication, is the first-line therapy for asthma worldwide. There are significant racial/ethnic differences in albuterol drug response.Objectives
To identify genetic variants important for bronchodilator drug response (BDR) in racially diverse children.Methods
We performed the first whole-genome sequencing pharmacogenetics study from 1,441 children with asthma from the tails of the BDR distribution to identify genetic association with BDR.Measurements and main results
We identified population-specific and shared genetic variants associated with BDR, including genome-wide significant (P < 3.53 × 10-7) and suggestive (P < 7.06 × 10-6) loci near genes previously associated with lung capacity (DNAH5), immunity (NFKB1 and PLCB1), and β-adrenergic signaling (ADAMTS3 and COX18). Functional analyses of the BDR-associated SNP in NFKB1 revealed potential regulatory function in bronchial smooth muscle cells. The SNP is also an expression quantitative trait locus for a neighboring gene, SLC39A8. The lack of other asthma study populations with BDR and whole-genome sequencing data on minority children makes it impossible to perform replication of our rare variant associations. Minority underrepresentation also poses significant challenges to identify age-matched and population-matched cohorts of sufficient sample size for replication of our common variant findings.Conclusions
The lack of minority data, despite a collaboration of eight universities and 13 individual laboratories, highlights the urgent need for a dedicated national effort to prioritize diversity in research. Our study expands the understanding of pharmacogenetic analyses in racially/ethnically diverse populations and advances the foundation for precision medicine in at-risk and understudied minority populations.