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Real-time volumetric reconstruction of biological dynamics with light-field microscopy and deep learning
- Wang, Zhaoqiang;
- Zhu, Lanxin;
- Zhang, Hao;
- Li, Guo;
- Yi, Chengqiang;
- Li, Yi;
- Yang, Yicong;
- Ding, Yichen;
- Zhen, Mei;
- Gao, Shangbang;
- Hsiai, Tzung K;
- Fei, Peng
Published Web Location
https://doi.org/10.1038/s41592-021-01058-xAbstract
Light-field microscopy has emerged as a technique of choice for high-speed volumetric imaging of fast biological processes. However, artifacts, nonuniform resolution and a slow reconstruction speed have limited its full capabilities for in toto extraction of dynamic spatiotemporal patterns in samples. Here, we combined a view-channel-depth (VCD) neural network with light-field microscopy to mitigate these limitations, yielding artifact-free three-dimensional image sequences with uniform spatial resolution and high-video-rate reconstruction throughput. We imaged neuronal activities across moving Caenorhabditis elegans and blood flow in a beating zebrafish heart at single-cell resolution with volumetric imaging rates up to 200 Hz.
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