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Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline
- Gorski, Mathias;
- Jung, Bettina;
- Li, Yong;
- Matias-Garcia, Pamela R;
- Wuttke, Matthias;
- Coassin, Stefan;
- Thio, Chris HL;
- Kleber, Marcus E;
- Winkler, Thomas W;
- Wanner, Veronika;
- Chai, Jin-Fang;
- Chu, Audrey Y;
- Cocca, Massimiliano;
- Feitosa, Mary F;
- Ghasemi, Sahar;
- Hoppmann, Anselm;
- Horn, Katrin;
- Li, Man;
- Nutile, Teresa;
- Scholz, Markus;
- Sieber, Karsten B;
- Teumer, Alexander;
- Tin, Adrienne;
- Wang, Judy;
- Tayo, Bamidele O;
- Ahluwalia, Tarunveer S;
- Almgren, Peter;
- Bakker, Stephan JL;
- Banas, Bernhard;
- Bansal, Nisha;
- Biggs, Mary L;
- Boerwinkle, Eric;
- Bottinger, Erwin P;
- Brenner, Hermann;
- Carroll, Robert J;
- Chalmers, John;
- Chee, Miao-Li;
- Chee, Miao-Ling;
- Cheng, Ching-Yu;
- Coresh, Josef;
- de Borst, Martin H;
- Degenhardt, Frauke;
- Eckardt, Kai-Uwe;
- Endlich, Karlhans;
- Franke, Andre;
- Freitag-Wolf, Sandra;
- Gampawar, Piyush;
- Gansevoort, Ron T;
- Ghanbari, Mohsen;
- Gieger, Christian;
- Hamet, Pavel;
- Ho, Kevin;
- Hofer, Edith;
- Holleczek, Bernd;
- Foo, Valencia Hui Xian;
- Hutri-Kähönen, Nina;
- Hwang, Shih-Jen;
- Ikram, M Arfan;
- Josyula, Navya Shilpa;
- Kähönen, Mika;
- Khor, Chiea-Chuen;
- Koenig, Wolfgang;
- Kramer, Holly;
- Krämer, Bernhard K;
- Kühnel, Brigitte;
- Lange, Leslie A;
- Lehtimäki, Terho;
- Lieb, Wolfgang;
- Loos, Ruth JF;
- Lukas, Mary Ann;
- Lyytikäinen, Leo-Pekka;
- Meisinger, Christa;
- Meitinger, Thomas;
- Melander, Olle;
- Milaneschi, Yuri;
- Mishra, Pashupati P;
- Mononen, Nina;
- Mychaleckyj, Josyf C;
- Nadkarni, Girish N;
- Nauck, Matthias;
- Nikus, Kjell;
- Ning, Boting;
- Nolte, Ilja M;
- O’Donoghue, Michelle L;
- Orho-Melander, Marju;
- Pendergrass, Sarah A;
- Penninx, Brenda WJH;
- Preuss, Michael H;
- Psaty, Bruce M;
- Raffield, Laura M;
- Raitakari, Olli T;
- Rettig, Rainer;
- Rheinberger, Myriam;
- Rice, Kenneth M;
- Rosenkranz, Alexander R;
- Rossing, Peter;
- Rotter, Jerome I;
- Sabanayagam, Charumathi;
- Schmidt, Helena;
- Schmidt, Reinhold;
- Schöttker, Ben;
- Schulz, Christina-Alexandra;
- Sedaghat, Sanaz;
- Shaffer, Christian M;
- Strauch, Konstantin;
- Szymczak, Silke;
- Taylor, Kent D;
- Tremblay, Johanne;
- Chaker, Layal;
- van der Harst, Pim;
- van der Most, Peter J;
- Verweij, Niek;
- Völker, Uwe;
- Waldenberger, Melanie;
- Wallentin, Lars;
- Waterworth, Dawn M;
- White, Harvey D;
- Wilson, James G;
- Wong, Tien-Yin;
- Woodward, Mark;
- Yang, Qiong;
- Yasuda, Masayuki;
- Yerges-Armstrong, Laura M;
- Zhang, Yan;
- Snieder, Harold;
- Wanner, Christoph;
- Böger, Carsten A;
- Köttgen, Anna;
- Kronenberg, Florian;
- Pattaro, Cristian;
- Heid, Iris M;
- Alizadeh, Behrooz Z;
- Boezen, H Marike;
- Franke, Lude;
- van der Harst, Pim;
- Navis, Gerjan;
- Rots, Marianne;
- Snieder, Harold;
- Swertz, Morris;
- Wolffenbuttel, Bruce HR;
- Wijmenga, Cisca;
- Abecasis, Goncalo;
- Baras, Aris;
- Cantor, Michael;
- Coppola, Giovanni;
- Economides, Aris;
- Lotta, Luca A;
- Overton, John D;
- Reid, Jeffrey G;
- Shuldiner, Alan;
- Beechert, Christina;
- Forsythe, Caitlin;
- Fuller, Erin D;
- Gu, Zhenhua;
- Lattari, Michael;
- Lopez, Alexander;
- Overton, John D;
- Schleicher, Thomas D;
- Padilla, Maria Sotiropoulos;
- Toledo, Karina;
- Widom, Louis;
- Wolf, Sarah E;
- Pradhan, Manasi;
- Manoochehri, Kia;
- Ulloa, Ricardo H;
- Bai, Xiaodong;
- Balasubramanian, Suganthi;
- Barnard, Leland;
- Blumenfeld, Andrew;
- Eom, Gisu;
- Habegger, Lukas;
- Hawes, Alicia;
- Khalid, Shareef;
- Reid, Jeffrey G;
- Maxwell, Evan K;
- Salerno, William;
- Staples, Jeffrey C;
- Jones, Marcus B;
- Mitnaul, Lyndon J
Published Web Location
https://doi.org/10.1016/j.kint.2020.09.030Abstract
Rapid decline of glomerular filtration rate estimated from creatinine (eGFRcrea) is associated with severe clinical endpoints. In contrast to cross-sectionally assessed eGFRcrea, the genetic basis for rapid eGFRcrea decline is largely unknown. To help define this, we meta-analyzed 42 genome-wide association studies from the Chronic Kidney Diseases Genetics Consortium and United Kingdom Biobank to identify genetic loci for rapid eGFRcrea decline. Two definitions of eGFRcrea decline were used: 3 mL/min/1.73m2/year or more ("Rapid3"; encompassing 34,874 cases, 107,090 controls) and eGFRcrea decline 25% or more and eGFRcrea under 60 mL/min/1.73m2 at follow-up among those with eGFRcrea 60 mL/min/1.73m2 or more at baseline ("CKDi25"; encompassing 19,901 cases, 175,244 controls). Seven independent variants were identified across six loci for Rapid3 and/or CKDi25: consisting of five variants at four loci with genome-wide significance (near UMOD-PDILT (2), PRKAG2, WDR72, OR2S2) and two variants among 265 known eGFRcrea variants (near GATM, LARP4B). All these loci were novel for Rapid3 and/or CKDi25 and our bioinformatic follow-up prioritized variants and genes underneath these loci. The OR2S2 locus is novel for any eGFRcrea trait including interesting candidates. For the five genome-wide significant lead variants, we found supporting effects for annual change in blood urea nitrogen or cystatin-based eGFR, but not for GATM or LARP4B. Individuals at high compared to those at low genetic risk (8-14 vs. 0-5 adverse alleles) had a 1.20-fold increased risk of acute kidney injury (95% confidence interval 1.08-1.33). Thus, our identified loci for rapid kidney function decline may help prioritize therapeutic targets and identify mechanisms and individuals at risk for sustained deterioration of kidney function.
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