- Puissant, Alexandre;
- Frumm, Stacey M;
- Alexe, Gabriela;
- Bassil, Christopher F;
- Qi, Jun;
- Chanthery, Yvan H;
- Nekritz, Erin A;
- Zeid, Rhamy;
- Gustafson, William Clay;
- Greninger, Patricia;
- Garnett, Matthew J;
- McDermott, Ultan;
- Benes, Cyril H;
- Kung, Andrew L;
- Weiss, William A;
- Bradner, James E;
- Stegmaier, Kimberly
Bromodomain inhibition comprises a promising therapeutic strategy in cancer, particularly for hematologic malignancies. To date, however, genomic biomarkers to direct clinical translation have been lacking. We conducted a cell-based screen of genetically defined cancer cell lines using a prototypical inhibitor of BET bromodomains. Integration of genetic features with chemosensitivity data revealed a robust correlation between MYCN amplification and sensitivity to bromodomain inhibition. We characterized the mechanistic and translational significance of this finding in neuroblastoma, a childhood cancer with frequent amplification of MYCN. Genome-wide expression analysis showed downregulation of the MYCN transcriptional program accompanied by suppression of MYCN transcription. Functionally, bromodomain-mediated inhibition of MYCN impaired growth and induced apoptosis in neuroblastoma. BRD4 knockdown phenocopied these effects, establishing BET bromodomains as transcriptional regulators of MYCN. BET inhibition conferred a significant survival advantage in 3 in vivo neuroblastoma models, providing a compelling rationale for developing BET bromodomain inhibitors in patients with neuroblastoma.