Skip to main content
eScholarship
Open Access Publications from the University of California

UC Berkeley

UC Berkeley Previously Published Works bannerUC Berkeley

Mixing Time for a Markov Chain on Cladograms

Abstract

A cladogram is a tree with labelled leaves and unlabelled degree-3 branchpoints. A certain Markov chain on the set of n-leaf cladograms consists of removing a random leaf (and its incident edge) and re-attaching it to a random edge. We show that the mixing time (time to approach the uniform stationary distribution) for this chain is at least O(n2) and at most O(n3).

Many UC-authored scholarly publications are freely available on this site because of the UC's open access policies. Let us know how this access is important for you.