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High-throughput miRNA sequencing of the human placenta: expression throughout gestation
- Gonzalez, Tania L;
- Eisman, Laura E;
- Joshi, Nikhil V;
- Flowers, Amy E;
- Wu, Di;
- Wang, Yizhou;
- Santiskulvong, Chintda;
- Tang, Jie;
- Buttle, Rae A;
- Sauro, Erica;
- Clark, Ekaterina L;
- DiPentino, Rosemarie;
- Jefferies, Caroline A;
- Chan, Jessica L;
- Lin, Yayu;
- Zhu, Yazhen;
- Afshar, Yalda;
- Tseng, Hsian-Rong;
- Taylor, Kent;
- Williams, John;
- Pisarska, Margareta D
Published Web Location
https://doi.org/10.2217/epi-2021-0055Abstract
Aim: To understand miRNA changes across gestation in healthy human placentae. This is essential before miRNAs can be used as biomarkers or prognostic indicators during pregnancy. Materials & methods: Using next-generation sequencing, we characterize the normative human placenta miRNome in first (n = 113) and third trimester (n = 47). Results & conclusion: There are 801 miRNAs expressed in both first and third trimester, including 182 with similar expression across gestation (p ≥ 0.05, fold change ≤2) and 180 significantly different (false discovery rate <0.05, fold change >2). Of placenta-specific miRNA clusters, chromosome 14 miRNA cluster decreases across gestation and chromosome 19 miRNA cluster is overall highly expressed. Chromosome 13 clusters are upregulated in first trimester. This work provides a rich atlas of healthy pregnancies to direct functional studies investigating the epigenetic differences in first and third trimester placentae.
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