Recent studies implicate the cohesin complex in transcriptional
control, potentially through influences on long-distance communication
between DNA elements. Animal models of Cornelia de
Lange Syndrome (CdLS), the most common “cohesinopathy,”
provide a unique opportunity to investigate both how cohesin
regulates transcription, and the physiological consequences of
disrupting that action. CdLS is most commonly caused by haploinsufficiency
for NIPBL, a protein important for loading cohesin
onto chromosomes, and individuals with CdLS frequently exhibit
limb defects, particularly forelimb reductions of varying severity.
Although Nipbl-deficient mice (Nipbl
þ/
mice), display no gross
limb abnormalities, we find that nipbl-deficient zebrafish exhibit
severe reduction defects of the pectoral fins, the homologues of the
mammalian forelimb. These defects are preceded by dysregulated
expression of key developmental genes in the early limb (fin) bud,
including fgfs in the apical ectodermal ridge; and shha, hand2, and
hox genes in limb mesenchyme. Intriguingly, a strikingly similar
pattern of gene expression changes can be detected in the limb buds
of Nipbl-haploinsufficient mice, although the magnitude of gene
expression changes is smaller. Limb bud-specific expression of Shh and Hox genes is known to be controlled by long-range enhancerpromoter
interactions, and the pattern of changes in hox expression
that occurs in Nipbl-deficient fin buds—characterized by downregulation
of 5
0
hox genes and up-regulation of 3
0
hox genes—is
consistent with the impairment of such long-range effects. Interestingly,
knocking down expression of Med12—a subunit of the
Mediator complex, which regulates promoter-enhancer communication
and can co-localize with Nipbl on DNA—phenocopies
morphological and transcriptional changes observed in Nipbldeficient
fin buds. Moreover, partial reductions of Nipbl and
Med12 interact synergistically, suggesting action in a common
pathway. Overall, the data support the view that Nipbl and cohesin,
most likely acting in concert with the Mediator complex, regulate
limb-specific gene expression and limb development by influencing
long-range chromosomal interactions, and suggest that these
changes in expression in Nipbl-deficient limbs and fins are pathophysiologically
significant in CdLS. Supported by NIH grant P01-
HD052860 to ALC and ADL.