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Open Access Publications from the University of California

The Sorghum bicolor genome and the diversification of grasses

  • Author(s): Paterson, Andrew H.
  • Bowers, John E.
  • Bruggmann, Remy
  • dubchak, Inna
  • Grimwood, Jane
  • Gundlach, Heidrun
  • Haberer, Georg
  • Hellsten, Uffe
  • Mitros, Therese
  • Poliakov, Alexander
  • Schmutz, Jeremy
  • Spannagl, Manuel
  • Tang, Haibo
  • Wang, Xiyin
  • Wicker, Thomas
  • Bharti, Arvind K.
  • Chapman, Jarrod
  • Feltus, F. Alex
  • Gowik, Udo
  • Grigoriev, Igor V.
  • Lyons, Eric
  • Maher, Christopher A.
  • Martis, Mihaela
  • Marechania, Apurva
  • Otillar, Robert P.
  • Penning, Bryan W.
  • Salamov, Asaf. A.
  • Wang, Yu
  • Zhang, Lifang
  • Carpita, Nicholas C.
  • Freeling, Michael
  • Gingle, Alan R.
  • hash, C. Thomas
  • Keller, Beat
  • Klein, Patricia
  • Kresovich, Stephen
  • McCann, Maureen C.
  • Ming, Ray
  • Peterson, Daniel G.
  • ur-Rahman, Mehboob-
  • Ware, Doreen
  • Westhoff, Peter
  • Mayer, Klaus F. X.
  • Messing, Joachim
  • Rokhsar, Daniel S.
  • et al.

Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre and fuel. We present an initial analysis of the approx730-megabase Sorghum bicolor (L.) Moench genome, placing approx98percent of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information. Genetic recombination is largely confined to about one-third of the sorghum genome with gene order and density similar to those of rice. Retrotransposon accumulation in recombinationally recalcitrant heterochromatin explains the approx75percent larger genome size of sorghum compared with rice. Although gene and repetitive DNA distributions have been preserved since palaeopolyploidization approx70 million years ago, most duplicated gene sets lost one member before the sorghum rice divergence. Concerted evolution makes one duplicated chromosomal segment appear to be only a few million years old. About 24percent of genes are grass-specific and 7percent are sorghum-specific. Recent gene and microRNA duplications may contribute to sorghum's drought tolerance.

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