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UC Santa Cruz Previously Published Works

Cover page of Astrovirus and norovirus infections and their association with diarrheal symptoms in immunocompromised children

Astrovirus and norovirus infections and their association with diarrheal symptoms in immunocompromised children

(2026)

Human astroviruses are a common cause of viral gastroenteritis and are often underdiagnosed. While infections are typically mild or asymptomatic in immunocompetent hosts, astrovirus can cause prolonged and severe disease in immunocompromised individuals. Here, we conducted a case-control study to evaluate the clinical presentation of astrovirus infections in paediatric oncology patients. Our findings were compared to two groups: (1) norovirus infections in the same immunocompromised cohort, and (2) a cohort of immunocompetent children with and without diarrheal symptoms. Astrovirus was detected in 9.8% of immunocompromised patients, with prolonged shedding seen in multiple cases. Astrovirus infection was associated with an increased odds of diarrhoea, although this association weakened when adjusting for co-infections. In contrast, norovirus was not significantly associated with diarrhoea in immunocompromised patients, despite prolonged shedding in 24% of the cohort. High rates of co-infection with adenovirus and Clostridium difficile may have influenced symptom patterns. In the immunocompetent cohort, astrovirus was not associated with diarrhoea, while norovirus showed a strong association with symptoms. These findings indicate that astrovirus infections are more likely to cause diarrhoea in immunocompromised paediatric patients, while often asymptomatic in immunocompetent children. Norovirus showed the opposite trend, highlighting distinct roles of host immune status in shaping clinical outcomes. These findings highlight the importance of considering astrovirus as a potential contributor to gastrointestinal symptoms in immunocompromised children and call for broader diagnostic testing and further research on viral co-infections and persistence.

A case study in bias mitigation in teaching evaluations by changing the questions

(2026)

Bias in student teaching evaluations is a well-documented issue. As predicted in the literature, our campus found that changing questions to focus more on student direct observation and metacognitive reflection, as well changing to a frequency scale, was correlated with an increase in favorable ratings for instructors who are women or from under-represented populations. We compare data from a full year of an older question set to a full year of a revised question set. Our campus focuses on the percent of responses in the top two (of five) categories as a summary of student feedback. A logistic regression analysis shows that the gaps between populations of instructors change significantly over the time of the change in questions.

Cover page of Microplastic concentration and composition in surface waters and in stream-rearing Steelhead Trout (Oncorhynchus mykiss) in a rural coastal California stream

Microplastic concentration and composition in surface waters and in stream-rearing Steelhead Trout (Oncorhynchus mykiss) in a rural coastal California stream

(2026)

Microplastic (particles <5 mm) is an emerging environmental concern that threatens aquatic ecosystems worldwide. While extensive research has documented the ubiquity of microplastic in marine and coastal environments and its assimilation by organisms at all trophic levels, comparatively little is known about microplastic occurrence in rural riverine ecosystems. Even less information exists for salmon-bearing streams, where microplastic pollution may hinder salmonid conservation and recovery efforts. We examined the presence and concentration of microplastic in Scott Creek, a small coastal California (USA) watershed with minimal urban development. Our study quantified suspended microplastic in surface waters and in the gastrointestinal (GI) tracts of juvenile Steelhead Trout (Oncorhynchus mykiss). Microplastic was detected in 93 % of water samples, indicating that Scott Creek routinely transports and cycles microplastic. Concentrations were higher in late summer than in spring, although monthly spatial patterns were largely consistent among sites. In juvenile steelhead, 60.6 % of GI tracts contained one or more types of microplastic. For both surface waters and juvenile steelhead, microplastic was predominantly small (<5 mm) dark blue, black, and transparent fiber-type particles, with fragments, shards and foams encountered less frequently. These findings suggest that fish ingest microplastic at low frequencies, or that ingested particles may pass rapidly through their digestive systems. This study provides one of the first assessments of microplastic in a minimally urbanized, salmon-bearing watershed. Our results serve as a baseline for evaluating the ecological implications of microplastic pollution in small coastal creeks and its potential to influence native salmonid populations. Data Availability The surface water and steelhead microplastic datasets generated and analyzed during the current study are publicly available via Zenodo (DOI: 10.5281/zenodo.18038857).

Cover page of Delayed structural prediction for relative clauses: A new argument for learning to parse from Santiago Laxopa Zapotec

Delayed structural prediction for relative clauses: A new argument for learning to parse from Santiago Laxopa Zapotec

(2026)

Comprehenders in many of the world's languages exhibit a preference or a greater ease in comprehending transitive relative clauses (RCs) when associating the dislocated head with a subject position. Some theories relate this preference to an early prediction that an animate head will serve as a subject. We present a picture selection experiment with eye-tracking investigating the role of such predictions in comprehending transitive RCs in Santiago Laxopa Zapotec, an Oto-Manguean language of southern Mexico where RCs are ambiguous unless they contain a resumptive pronoun. Patterns of offline choices and incremental looking suggest that Santiago Laxopa Zapotec comprehenders avoid forming predictive interpretations of the RC head, and do not take its animacy into account in early processing. Instead, comprehenders exhibit a later, animacy-sensitive bias to interpret the RC-internal co-argument as a subject. Overall, we take this pattern as evidence that a comprehender's structural predictions must be somehow dependent on experience-based tuning, while more universal pressures like similarity-based interference remain fixed. The lingering question for theories of cross-linguistic processing is how much of our predictive mechanism is tunable: do we tune just the distribution of expected structures which directs predictions, or also the practice of deploying predictions itself? We discuss how either of these approaches might explain the pattern we observe in Santiago Laxopa Zapotec, and highlight that an answer to this question will depend on continued investigations across a diverse sample of the world's languages.

Cover page of Achieving Secure Routing within AutonomousSystems Independently of Routing Protocols

Achieving Secure Routing within AutonomousSystems Independently of Routing Protocols

(2026)

The protocols currently in place for routing within autonomous systems (ASes) of the Internet (e.g., OSPFv2, IS-IS, EIGRP and RIPv2) lack confidentiality and are  vulnerable to many cyber attacks. Traditional approaches to adopting security measures in routing protocols rely on either manual configuration of too many symmetric keys or using key-distribution methods that require trust in third parties and digital certificates.  This paper describes a new approach to secure  routing within ASes that does not make any changes to existing or future routing protocols and completely eliminates the need to use  IPsec, digital certificates, manual configuration of link-authentication secrets or passwords, or auxiliary key distribution systems. Trusted routers in the same autonomous system are configured with the same two secret integers, and  any two neighbor routers use those secrets to become cryptographically entangled in the use of  encryption keys to  provide message confidentiality, integrity, and cryptographic authentication. Experimental results show that the new approach to attain secure routing independently of existing or future routing protocols  introduces minimum delays for the encryption and decryption of signaling messages among routers.

Measurement of Charged-Particle Production in sNN=9.62 TeV Proton-Oxygen Collisions as a Probe of Cosmic-Ray Air Showers with the ATLAS Detector

(2026)

This Letter presents a measurement of prompt charged-particle production in proton-oxygen interactions at center-of-mass energy with the ATLAS detector, corresponding to of integrated luminosity. A total of selected events have at least one track with transverse momentum and pseudorapidity . The measured fiducial proton-oxygen cross section is and the extrapolated inelastic proton-air cross section is . Measurements of charged-particle multiplicity, , and distributions are an order-of-magnitude more precise than differences between hadronic-interaction models. These results enable improved modeling of cosmic-ray air showers, which is important for astroparticle physics.

Cover page of Flash Communication: Addition of Acid Anhydrides to Monomeric Stibine Oxides

Flash Communication: Addition of Acid Anhydrides to Monomeric Stibine Oxides

(2026)

The polarized and unsaturated Sb-O bond of stibine oxides exhibits a combination of electrophilicity at the antimony atom and nucleophilicity at the oxygen atom. Here, we explore the consequent ability of Mes3SbO compounds to undergo 1,2-addition chemistry with carboxylic, sulfonic, and phosphinic acid anhydrides to afford stiboranes of the type Mes3SbX2. With the bulkier stibine oxide Dipp3SbO, reaction with triflic anhydride permits in situ preparation of Dipp3Sb-(OTf)2, which crystallized as the stibonium triflate salt. This reactivity also enables the disaggregation of the polymeric stibine oxide (Ph3SbO)n under mild conditions, providing an alternative synthetic route to Ph3SbX2 products.

Measurements of Z-Boson Pair Entanglement in Decays of Higgs Bosons at the ATLAS Experiment

(2026)

Entanglement is a key property of quantum systems. In this Letter the first measurements of quantum entanglement between spins in pairs of bosons are reported, using proton-proton collision data from the Large Hadron Collider (LHC) at center-of-mass energies of 13 and 13.6 TeV, recorded with the ATLAS detector. Measurements of angular observables sensitive to spin-density-matrix elements in the process yield coefficients and , consistent with their Standard Model predictions. A complementary hypothesis test using the full angular distribution, and relying on several Standard Model assumptions in the decays, provides substantially higher sensitivity to quantum correlations and disfavors the separable-state hypothesis at a significance of 4.7 standard deviations (expected ) relative to the entangled Standard Model hypothesis. These results provide strong evidence of quantum entanglement between massive bosons (spin qutrits) at the electroweak scale.

The kinase SPE-55 promotes localized assembly of the major sperm protein in Caenorhabditis elegans spermatocytes

(2026)

The crawling motility of nematode sperm is driven by the unconventional cytoskeletal protein, Major Sperm Protein (MSP). In developing spermatocytes, MSP assembles on the cytosolic side of Golgi-derived membranous organelles (MOs) in structures called Fibrous Bodies (FBs). These MSP-laden FB-MO complexes facilitate the subsequent segregation of MSP to budding spermatids and away from central residual bodies. Here we identify SPE-55 as a key FB assembly factor. In spe-55 spermatocytes, MSP remains diffusely cytosolic, and minimal MSP segregates to spermatids. The resulting spe-55 spermatozoa are motility-defective. SPE-55 localizes directly to MOs where it recruits the intrinsically disordered protein SPE-18 to initiate FB assembly, yet unlike SPE-6 or SPE-18, SPE-55 is required neither to complete meiosis nor to produce spermatids. Our study reveals an essential interplay between localized kinases and intrinsically disordered proteins in assembling large cytoskeletal complexes.