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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad

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https://www.nature.com/articles/s41587-023-01982-7
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Creative Commons 'BY' version 4.0 license
Abstract

The detection of mobile genetic elements is crucial for exploring the ecology and evolution of microbial communities, and it has diverse implications in biotechnology and public health. geNomad is a computational framework that enables researchers to precisely identifiy and annotate plasmids and viruses in sequencing data on a large scale.

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