Center for Marine Biodiversity and Conservation

Breeding colonies of Mōlī (Phoebastria immutabilis) have shown reproductive declines in association with oceanographic and environmental variables such as the El Niño Southern Oscillation and North Pacific Gyre Oscillation. Reproductive responses to environmental extremes such as those associated with short-term climate events may provide clues to how the species will respond to long-term changes in global climate. This study examines reproductive success of Mōlī on Sand Island, Pihemanu, the largest breeding colony in the world, and finds that different colonies may respond differently to oceanographic variables such as the North Pacific Gyre Oscillation. Further study of the North Pacific Gyre Oscillation and its role in the position of the Transition Zone Chlorophyll front are necessary to more fully understand the dynamics of reproductive success throughout breeding colonies on islands in the subtropics.

The issues, that small islands face, regarding the disposal and management of their solid waste are serious. Although not all small islands face the same problems, it is worth looking at one island in particular as a case study to get a better understanding of some of these issues. Malapascua Island in the Philippines, a small island, has over a very short time gone through a period of rapid development due to tourism. Malapascua Island’s solid waste disposal

infrastructure has not kept up with this rapid development. The management and disposal of solid waste has now become a serious issue that needs addressing. Malapascua’s current issues create a platform for the study of the causes as well as possible solutions to the issue of solid waste management. The approach taken is to describe well-developed solid waste management systems contrasted with the current problems faced on Malapascua to examine if there is any way of adapting modern systems to serve Malapascua’s current and future needs.

This capstone report involves the relationship between marine conservation biologists and funding. The goal is to help scientists pitch their projects in a way that compels potential philanthropists dedicated to ocean conservation to financially contribute by investigating transferable communication tools that scientists can utilize. This has been done through conducting interviews with various marine foundations and institutions’ program departments. Upon conducting extensive research in marine fundraising, it becomes clear that there has been a shift in the philanthropic landscape that requires scientists and labs to think differently about cultivating relationships with donors. Ocean science research has been reliant upon now dwindling large scale financial support from federal agencies. This research highlights the importance of cultivating relationships with philanthropists and marine conservation foundations through new and different communication approaches.

Funded by the Alfred P. Sloan Foundation's, Known, Unknown and Unknowable project. This is the first in a series of three conferences held at Scripps Institution of Oceanography to explore the structure and knowledge of marine systems. The report describes how the conference was organized and the results of the conference.

This report covers the second conference supported by the Alfred P. Sloan Foundation's Known, Unknown and Unknowable Program. The conference goal is to explore the structure and limits to knowledge of marine ecosystems and implications of the state of our knowledge to research, policy and society at large.

This conference highlighted the importance of understanding past ecosystems and how they have changed, and asked how we can make use of this historical perspective to better understand the present and to safeguard and manage to future.

The reports on the third in a series of conferences funded by the Alfred P. Sloan Foundation's, Known, Unknown and Unknowable program. The purpose of the conference was to explore two main aspects of marine biodiversity in the near (2020) future: (a) projections on anthropogenic drivers and (b)projections on impacts on marine biodiversity.

Recognizing the need for improved coordination, the Small-scale and Artisanal Fisheries Research Network (SAFRN), at the Scripps Institution of Oceanography’s Center for Marine Biodiversity and Conservation (CMBC), was established in 2010 by graduate students as an interdisciplinary hub of students, researchers, and faculty studying small-scale fisheries (SSF). Our goals are to: enhance communication and collaboration across disciplines, projects, and sectors; share research guidelines and methodologies; and connect research to meaningful management actions.SAFRN has developed the Snapshot Assessment Protocol (SnAP), an interdisciplinary, standardized toolkit for describing SSF holistically, including ecological, social, cultural, economic, and governance-related aspects of these fisheries and the related communities. SnAP is a key part of our 2011-2012 project, “Coordinating Research for Sustaining Artisanal Fisheries”, funded by the Waitt Foundation.

Pseudomonads are cosmopolitan microorganisms able to produce a wide array of specialized metabolites. These molecules allow Pseudomonas to scavenge nutrients, sense population density and enhance or inhibit growth of competing microorganisms. However, these valuable metabolites are typically characterized one-molecule–one-microbe at a time, instead of being inventoried in large numbers. To index and map the diversity of molecules detected from these organisms, 260 strains of ecologically diverse origins were subjected to mass-spectrometry-based molecular networking. Molecular networking not only enables dereplication of molecules, but also sheds light on their structural relationships. Moreover, it accelerates the discovery of new molecules. Here, by indexing the Pseudomonas specialized metabolome, we report the molecular-networking-based discovery of four molecules and their evolutionary relationships: a poaeamide analogue and a molecular subfamily of cyclic lipopeptides, bananamides 1, 2 and 3. Analysis of their biosynthetic gene cluster shows that it constitutes a distinct evolutionary branch of the Pseudomonas cyclic lipopeptides. Through analysis of an additional 370 extracts of wheat-associated Pseudomonas, we demonstrate how the detailed knowledge from our reference index can be efficiently propagated to annotate complex metabolomic data from other studies, akin to the way in which newly generated genomic information can be compared to data from public databases.

The 16S rRNA gene sequence diversity within the Phylum Actinobacteria was assessed from four sources: PCR-generated V6 sequence tags derived from seawater samples, metagenomic data from the Global Ocean Sampling (GOS) expedition, marine-derived sequences maintained in the Ribosomal Database Project (RDP), and select cultured strains for which sequence data is not yet available in the RDP. This meta-analysis revealed remarkable levels of phylogenetic diversity and confirms the existence of major, deeply rooted, and as of yet uncharacterized lineages within the phylum. A dramatic incongruence among cultured strains and those detected using culture-independent techniques was also revealed. Redundancy among the actinobacteria detected using culture-independent techniques suggests that greater sequence coverage or improved DNA extraction efficiencies may be required to detect the rare phylotypes that can be readily cultured from marine samples. Conversely, new strategies need to be developed for the cultivation of frequently observed but yet to be cultured marine actinobacteria.

Metagenomic analysis and functional characterization of biosynthetic genes uncovers the basis for widespread polybrominated diphenyl ether biosynthesis in cyanobacterial endosymbionts of marine Dysideidae sponges.